New tracers can identify frack fluids in the environment

Scientists have developed new geochemical tracers that can identify hydraulic fracturing flowback fluids that have been spilled or released into the environment.

The tracers, which were created by a team of U.S. and French researchers, have been field-tested at a spill site in West Virginia and downstream from an oil and gas brine wastewater treatment plant in Pennsylvania.

“This gives us new forensic tools to detect if ‘frac fluids’ are escaping into our water supply and what risks, if any, they might pose,” said Duke University geochemist Avner Vengosh, who co-led the research.

“By characterizing the isotopic and geochemical fingerprints of enriched boron and lithium in flowback water from hydraulic fracturing, we can now track the presence of frac fluids in the environment and distinguish them from wastewater coming from other sources, including conventional oil and gas wells,” Vengosh said.

Using the tracers, scientists can determine where fracturing fluids have or haven’t been released to the environment and, ultimately, help identify ways to improve how shale gas wastewater is treated and disposed of.

Vengosh and his colleagues published their peer-reviewed findings October 20 in the journal Environmental Science & Technology. Their study, which was funded in part by the National Science Foundation, is the first to report on the development of the boron and lithium tracers.

Nathaniel R. Warner, Obering Postdoctoral Fellow at Dartmouth College, was lead author of the study. “This new technology can be combined with other methods to identify specific instances of accidental releases to surface waters in areas of unconventional drilling,” he said. “It could benefit industry as well as federal and state agencies charged with monitoring water quality and protecting the environment.”

Hydraulic fracturing fluids, or frac fluids, typically contain mixes of water, proprietary chemicals and sand. Mixtures can vary from site to site. Drillers inject large volumes of the fluids down gas wells at high pressure to crack open shale formations deep underground and allow natural gas trapped within the shale to flow out and be extracted. After the shale has been fractured, the frac fluids flow back up the well to the surface along with the gas and highly saline brines from the shale formation.

Some people fear that toxic frac fluid chemicals in this flowback could contaminate nearby water supplies if flowback were accidentally spilled or insufficiently treated before being disposed of.

“The flowback fluid that returns to the surface becomes a waste that needs to be managed,” Vengosh explained. “Deep-well injection is the preferable disposal method, but injecting large volumes of wastewater into deep wells can cause earthquakes in sensitive areas and is not geologically available in some states. In Pennsylvania, much of the flowback is now recycled and reused, but a significant amount of it is still discharged into local streams or rivers.”

Vengosh said it’s possible to identify the presence of frac fluid in spilled or discharged flowback by tracing synthetic organic compounds that are added to the fluid before it’s injected down a well. But the proprietary nature of these chemicals, combined with their instability in the environment, limits the usefulness of such tracers.

By contrast, the new boron and lithium tracers remain stable in the environment. “The difference is that we are using tracers based on elements that occur naturally in shale formations,” Vengosh said.

When drillers inject frac fluids into a shale formation, they not only release hydrocarbon but also boron and lithium that are attached to clay minerals within the formation, he explained. As the fluids react and mix at depth, they become enriched in boron and lithium. As they are brought back to the surface, they have distinctive isotopic fingerprints that are different from other types of wastewater, including wastewater from a conventional gas or oil well, as well as from naturally occurring background water.

“This type of forensic research allows us to clearly delineate between the possible sources of wastewater contamination,” Vengosh said.

A unique approach to monitoring groundwater supplies near Ohio fracking sites

This image shows a drilling rig in Carroll County, Ohio. -  Amy Townsend-Small
This image shows a drilling rig in Carroll County, Ohio. – Amy Townsend-Small

A University of Cincinnati research project is taking a groundbreaking approach to monitoring groundwater resources near fracking sites in Ohio. Claire Botner, a UC graduate student in geology, will outline the project at The Geological Society of America’s Annual Meeting & Exposition. The meeting takes place Oct. 19-22, in Vancouver.

Botner’s research is part of UC Groundwater Research of Ohio (GRO), a collaborative research project out of UC to examine the effects of fracking (hydraulic fracturing) on groundwater in the Utica Shale region of eastern Ohio. First launched in Carroll County in 2012, the GRO team of researchers is examining methane levels and origins of methane in private wells and springs before, during and after the onset of fracking. The team travels to the region to take water samples four times a year.

Amy Townsend-Small, the lead researcher for GRO and a UC assistant professor of geology, says the UC study is unique in comparison with studies on water wells in other shale-rich areas of the U.S. where fracking is taking place – such as the Marcellus Shale region of Pennsylvania.

Townsend-Small says water samples finding natural gas-derived methane in wells near Pennsylvania fracking sites were taken only after fracking had occurred, so methane levels in those wells were not documented prior to or during fracking in Pennsylvania.

Hydraulic fracturing, or fracking, involves using millions of gallons of water mixed with sand and chemicals to break up organic-rich shale to release natural gas resources.

Proponents say the practice promises a future in lower energy prices, an increase in domestic jobs and less dependence on foreign oil from unstable overseas governments.

Opponents raise concerns about increasing methane gas levels (a powerful greenhouse gas) and other contamination involving the spillover of fracking wastewater in the groundwater of shale-rich regions.

“The only way people with private groundwater will know whether or not their water is affected by fracking is through regular monitoring,” says Townsend-Small.

The Ohio samples are being analyzed by UC researchers for concentrations of methane as well as other hydrocarbons and salt, which is pulled up in the fracking water mixture from the shales. The shales are ancient ocean sediments.

Botner’s study involves testing on 22 private wells in Carroll County between November 2012 and last May. The first fracking permits were issued in the region in 2011. So far, results indicate that any methane readings in groundwater wells came from organic matter. In less than a handful of cases, the natural methane levels were relatively high, above 10 milligrams per liter. However, most of the wells carried low levels of methane.

The UC sampling has now been expanded into Columbiana, Harrison, Stark and Belmont counties in Ohio. Researchers then review data on private drinking water wells with the homeowners. “We’re working on interacting with these communities and educating them about fracking as well as gathering scientific data, which is lacking on a very sensitive issue,” says Botner. “It can also be reassuring to receive data on their water supplies from an objective, university resource.”

The team also is seeking additional funding to begin monitoring groundwater wells near wastewater injection wells, where fracking brine is deposited after the wells are drilled.


Funding for Botner’s research to be presented at the GSA meeting is supported by a grant from the Missouri-based Deer Creek Foundation.

Botner is among UC graduate students and faculty who are presenting more than two dozen research papers, PowerPoint presentations or poster exhibitions at the GSA meeting. The meeting draws geoscientists from around the world representing more than 40 different disciplines.

UC’s nationally ranked Department of Geology conducts field research around the world in areas spanning paleontology, Quaternary geology, geomorphology, sedimentology, stratigraphy, tectonics, environmental geology and biogeochemistry.

The Geological Society of America, founded in 1888, is a scientific society with more than 26,500 members from academia, government and industry in more than 100 countries. Through its meetings, publications and programs, GSA enhances the professional growth of its members and promotes the geosciences in the service of humankind.

Geologists dig into science around the globe, on land and at sea

University of Cincinnati geologists will be well represented among geoscientists from around the world at The Geological Society of America’s Annual Meeting and Exposition. The meeting takes place Oct. 19-22, in Vancouver, Canada, and will feature geoscientists representing more than 40 different disciplines. The meeting will feature highlights of UC’s geological research that is taking place globally, from Chile to Costa Rica, Belize, Bulgaria, Scotland, Trinidad and a new project under development in the Canary Islands.

UC faculty and graduate students are lead or supporting authors on more than two dozen Earth Sciences-related research papers and/or PowerPoint and poster exhibitions at the GSA meeting.

The presentations also cover UC’s longtime and extensive exploration and findings in the Cincinnati Arch of the Ohio Valley, world-renowned for its treasure trove of paleontology – plant and animal fossils that were preserved when a shallow sea covered the region 450 million years ago during the Paleozoic Era.

Furthermore, in an effort to diversify the field of researchers in the Earth Sciences, a UC assistant professor of science education and geology, Christopher Atchison, was awarded funding from the National Science Foundation and the Society of Exploration Geophysics to lead a research field trip in Vancouver for students with disabilities. Graduate and undergraduate student participants will conduct the research on Oct. 18 and then join events at the GSA meeting. They’ll be guided by geoscience researchers representing the United Kingdom, New Zealand, Canada and the U.S. Those guides include Atchison and Julie Hendricks, a UC special education major from Batavia, Ohio, who will be using her expertise in American Sign Language (ASL) to assist student researchers representing Deaf and Hard of Hearing communities.

The meeting will also formally introduce Arnold Miller, UC professor of geology, as the new president-elect of the national Paleontological Society Thomas Lowell, professor of geology, is a recently elected Fellow of the Geological Society of America – a recognition for producing a substantial body of research. Lowell joins colleagues Warren Huff, professor of geology, and Lewis Owen, professor and head of the Department of Geology, as GSA Fellows.

Here are highlights of the UC research to be presented at the GSA meeting Oct. 19-22:

Staying Put or Moving On? Researchers Develop Model to Identify Migrating Patterns of Different Species

Are plant and animal species what you might call lifelong residents – they never budge from the same place? That’s a relatively common belief in ecology and paleoecology – that classes of organisms tend to stay put over millions of years and either evolve or go extinct as the environment changes. UC researchers developed a series of numerical models simulating shifting habitats in fossil regions to compare whether species changed environments when factoring geological and other changes in the fossil record. They found that geologically driven changes in the quality of the fossil record did not distort the real ecological signal, and that most species maintained their particular habitat preferences through time. They did not evolve to adapt to changing environments, but rather, they migrated, following their preferred environments. That is to say, they did not stay in place geographically but by moving, they were able to track their favored habitats. Field research for the project was conducted in New York state as well as the paleontological-rich region of Cincinnati; Dayton, Ohio, Lexington, Ky.; and Indiana. Funding for the project was supported by The Paleontological Society; The Geological Society of America; The American Museum of Natural History and the UC Geology Department’s Kenneth E. Caster Memorial Fund.

Presenter: Andrew Zaffos, UC geology doctoral student

Co-authors: Arnold Miller, Carlton Brett

Pioneering Study Provides a Better Understanding of What Southern Ohio and Central Kentucky Looked Like Hundreds of Millions of Years Ago

The end of the Ordovician period resulted in one of the largest mass extinction events in the Earth’s history. T.J. Malgieri, a UC master’s student in geology, led this study examining the limestone and shales of the Upper Ordovician Period – the geologic Grant Lake Formation covering southern Ohio and central Kentucky – to recreate how the shoreline looked some 445 million years ago. In this pioneering study of mud cracks and deposits in the rocks, the researchers discovered that the shoreline existed to the south and that the water became deeper toward the north. By determining these ecological parameters, the ramp study provides a better understanding of environments during a time of significant ecological change. Malgieri says the approach can be applied to other basins throughout the world to create depth indicators in paeloenvironments.

Presenter: T.J. Malgieri, UC geology master’s student

Co-authors: Carlton Brett, Cameron Schalbach, Christopher Aucoin, UC; James Thomka (UC, University of Akron); Benjamin Dattilo, Indiana University Purdue University Ft. Wayne

UC Researchers Take a Unique Approach to Monitoring Groundwater Supplies Near Ohio Fracking Sites

A collaborative research project out of UC is examining effects of fracking on groundwater in the Utica Shale region of eastern Ohio. First launched in Carroll County in 2012, the team of researchers is examining methane levels and origins of methane in private wells and springs before, during and after the onset of fracking. The team travels to the region to take water samples four times a year.

Presenter: Claire Botner, a UC geology master’s student

Co-author: Amy Townsend-Small, UC assistant professor of geology

Sawing Through Seagrass to Reveal Clues to the Past

Kelsy Feser, a UC doctoral student in geology, is working at several sites around St. Croix in the Virgin Islands to see if human developments impact marine life. The research focuses on shells of snails and clams that have piled up on the sea floor for thousands of years. Digging through layers of thick seagrass beds on the ocean floor, Feser can examine deeper shells that were abundant thousands of years ago and compare them to shallower layers that include living clams and snails. Early analysis indicates a greater population of potentially pollution-tolerant mussels in an area near a landfill on the island, compared with shells from much earlier time periods. Feser is doing this sea grass analysis around additional sites including tourist resorts, an oil refinery, a power plant and a marina. Funding for the research is provided by the Paleontological Society, the GSA, the American Museum of Natural History and the UC Geology Department.

Presenter: Kelsy Feser, UC geology doctoral student

Co-authors: Arnold Miller

Turning to the Present to Understand the Past

In order to properly interpret changes in climate, vegetation, or animal populations over time, it is necessary to establish a comparative baseline. Stella Mosher, a UC geology master’s student, is studying stable carbon, nitrogen, sulfur and strontium isotopes in modern vegetation from the Canary Islands in order to quantify modern climatic and environmental patterns. Her findings will provide a crucial foundation for future UC research on regional paleoclimatic and paleoenvironmental shifts.

Presenter: Stella Mosher, graduate student in geology

Co-authors: Brooke Crowley, assistant professor of geology; Yurena Yanes, research assistant professor of geology

A Study on the Impact of Sea Spray

Sulfur is an element of interest in both geology and archaeology, because it can reveal information about the diets of ancient cultures. This study takes a novel approach to studying how sea spray can affect the sulfur isotope values in plants on a small island, focusing on the island of Trinidad. Researchers collected leaves from different plant species to get their sulfur isotope value, exploring whether wind direction played a role in how plants were influenced by the marine water from sea spray. Vegetation was collected from the edges of the island to the deeply forested areas. The study found that sulfur isotope values deeper inland and on the calmer west coast were dramatically lower in indicating marine water than vegetation along the edges and the east coast. The findings can help indicate the foraging activities of humans and animals. Funding for the study was supported by the Geological Society of America, the UC Graduate Student Association and the UC Department of Geology.

Presenter: Janine Sparks, UC geology doctoral student

Co-authors: Brooke Crowley, UC assistant professor, geology/anthropology; William Gilhooly III, assistant professor, Earth Sciences, Indiana University-Purdue University Indianapolis

Proxy Wars – The Paleobiology Data Debate

For the past several decades, paleobiologists have built large databases containing information on fossil plants and animals of all geological ages to investigate the timing and extent of major changes in biodiversity – changes such as mass extinctions that have taken place throughout the history of life. Biodiversity researcher Arnold Miller says that in building these databases, it can be a challenge to accurately identify species in the geological record, so it has been common for researchers to instead study biodiversity trends using data compiled at broader levels of biological classification, including the genus level, under the assumption that these patterns are effective proxies for what would be observed among species if the data were available. Miller has been involved in construction of The Paleobiology Database, an extensive public online resource that contains global genus- and species-level data, now permitting a direct, novel look at the similarities and differences between patterns at these two levels. Miller’s discussion aims to set the record straight as to when researchers can effectively use a genus as a proxy for a species and also when it’s inappropriate. This research is funded by the NASA Astrobiology Program.

Presenter: Arnold Miller, UC professor of geology

A Novel New Method for Examining the Distribution of Pores in Rocks

Oil and gas companies take an interest in the porosity of sedimentary rocks because those open spaces can be filled with fuel resources. Companies involved with hydraulic fracturing (“fracking”) are also interested in porosity because it could be a source for storing wastewater as a result of fracking. In this unique study, UC researchers made pore-size measurements similar to those used in crystal size distribution (CSD) theory to determine distribution of pores as a function of their sizes, using thin sections of rock. In addition to providing accurate porosity distribution at a given depth, their approach can be extended to evaluate variation of pore spaces as a function of depth in a drill core, percent of pores in each size range, and pore types and pore geometry. The Texas Bureau of Economic Geology provided the rock samples used in the study. Funding for the study was supported by the Turkish Petroleum Corporation.

Presenter: Ugurlu Ibrahim, master’s student in geology

Co-author: Attila Kilinc, professor of geology

Researchers Turn to 3-D Technology to Examine the Formation of Cliffband Landscapes

A blend of photos and technology takes a new twist on studying cliff landscapes and how they were formed. The method called Structure-From-Motion Photogrammetry – computational photo image processing techniques – is used to study the formation of cliff landscapes in Colorado and Utah and to understand how the layered rock formations in the cliffs are affected by erosion.

Presenter: Dylan Ward, UC assistant professor of geology

Testing the Links Between Climate and Sedimentation in the Atacama Desert, Northern Chile

The Atacama Desert is used as an analog for understanding the surface of Mars. In some localities, there has been no activity for millions of years. UC researchers have been working along the flank of the Andes Mountains in northern Chile, and this particular examination focuses on the large deposits of sediment that are transported down the plateau and gather at the base. The researchers are finding that their samples are not reflecting the million-year-old relics previously found on such expeditions, but may indicate more youthful activity possibly resulting from climatic events. The research is supported by a $273,634 grant from the National Science Foundation to explore glacio-geomorphic constraints on the climate history of subtropical northern Chile.

Presenter: Jason Cesta, UC geology master’s student

Co-author: Dylan Ward, UC assistant professor of geology

Uncovering the Explosive Mysteries Surrounding the Manganese of Northeast Bulgaria

UC’s geology collections hold minerals from field expeditions around the world, including manganese from the Obrochishte mines of northeastern Bulgaria. Found in the region’s sedimentary rock, manganese can be added to metals such as steel to improve strength. It’s widely believed that these manganese formations were the result of ocean water composition at the time the sediments were deposited in the ocean. In this presentation, UC researchers present new information on why they believe the manganese formations resulted from volcanic eruptions, perhaps during the Rupelian stage of the geologic time scale, when bentonite clay minerals were formed. The presentation evolved from an advance class project last spring under the direction of Warren Huff, a UC professor of geology.

Presenter: Jason Cesta, UC geology master’s student

Co-authors: Warren Huff, UC professor of geology; Christopher Aucoin; Michael Harrell; Thomas Malgieri; Barry Maynard; Cameron Schwalbach; Ibrahim Ugurlu; Antony Winrod

Two UC researchers will chair sessions at the GSA meeting: Doctoral student Gary Motz will chair the session, “Topics in Paleoecology: Modern Analogues and Ancient Systems,” on Oct. 19. Matt Vrazo, also a doctoral student in geology, is chairing “Paleontology: Trace Fossils, Taphonomy and Exceptional Preservation” on Oct. 21, and will present, “Taphonomic and Ecological Controls on Eurypterid Lagerstäten: A Model for Preservation in the Mid-Paleozoic.”


UC’s nationally ranked Department of Geology conducts field research around the world in areas spanning paleontology, quaternary geology, geomorphology, sedimentology, stratigraphy, tectonics, environmental geology and biogeochemistry.

The Geological Society of America, founded in 1888, is a scientific society with more than 26,500 members from academia, government, and industry in more than 100 countries. Through its meetings, publications, and programs, GSA enhances the professional growth of its members and promotes the geosciences in the service of humankind.

2015 DOE JGI’s science portfolio delves deeper into the Earth’s data mine

The U.S. Department of Energy Joint Genome Institute (DOE JGI), a DOE Office of Science user facility, has announced that 32 new projects have been selected for the 2015 Community Science Program (CSP). From sampling Antarctic lakes to Caribbean waters, and from plant root micro-ecosystems, to the subsurface underneath the water table in forested watersheds, the CSP 2015 projects portfolio highlights diverse environments where DOE mission-relevant science can be extracted.

“These projects catalyze JGI’s strategic shift in emphasis from solving an organism’s genome sequence to enabling an understanding of what this information enables organisms to do,” said Jim Bristow, DOE JGI Science Deputy who oversees the CSP. “To accomplish this, the projects selected combine DNA sequencing with large-scale experimental and computational capabilities, and in some cases include JGI’s new capability to write DNA in addition to reading it. These projects will expand research communities, and help to meet the DOE JGI imperative to translate sequence to function and ultimately into solutions for major energy and environmental problems.”

The CSP 2015 projects were selected by an external review panel from 76 full proposals received that resulted from 85 letters of intent submitted. The total allocation for the CSP 2015 portfolio is expected to exceed 60 trillion bases (terabases or Tb)-or the equivalent of 20,000 human genomes of plant, fungal and microbial genome sequences. The full list of projects may be found at The DOE JGI Community Science Program also accepts proposals for smaller-scale microbial, resequencing and DNA synthesis projects and reviews them twice a year. The CSP advances projects that harness DOE JGI’s capability in massive-scale DNA sequencing, analysis and synthesis in support of the DOE missions in alternative energy, global carbon cycling, and biogeochemistry.

Among the CSP 2015 projects selected is one from Regina Lamendella of Juniata College, who will investigate how microbial communities in Marcellus shale, the country’s largest shale gas field, respond to hydraulic fracturing and natural gas extraction. For example, as fracking uses chemicals, researchers are interested in how the microbial communities can break down environmental contaminants, and how they respond to the release of methane during oil extraction operations.

Some 1,500 miles south from those gas extraction sites, Monica Medina-Munoz of Penn State University will study the effect of thermal stress on the Caribbean coral Orbicella faveolata and the metabolic contribution of its coral host Symbiodinium. The calcium carbonate in coral reefs acts as carbon sinks, but reef health depends on microbial communities. If the photosynthetic symbionts are removed from the coral host, for example, the corals can die and calcification rates decrease. Understanding how to maintain stability in the coral-microbiome community can provide information on the coral’s contribution to the global ocean carbon cycle.

Longtime DOE JGI collaborator Jill Banfield of the University of California (UC), Berkeley is profiling the diversity of microbial communities found in the subsurface from the Rifle aquifer adjacent to the Colorado River. The subsurface is a massive, yet poorly understood, repository of organic carbon as well as greenhouse gases. Another research question, based on having the microbial populations close to both the water table and the river, is how they impact carbon, nitrogen and sulfur cycles. Her project is part of the first coordinated attempt to quantify the metabolic potential of an entire subsurface ecosystem under the aegis of the Lawrence Berkeley National Laboratory’s Subsurface Biogeochemistry Scientific Focus Area.

Banfield also successfully competed for a second CSP project to characterize the tree-root microbial interactions that occur below the soil mantle in the unsaturated zone or vadose zone, which extends into unweathered bedrock. The project’s goal is to understand how microbial communities this deep underground influence tree-based carbon fixation in forested watersheds by the Eel River in northwestern California.

Several fungal projects were selected for the 2015 CSP portfolio, including one led by Kabir Peay of Stanford University. He and his colleagues will study how fungal communities in animal feces decompose organic matter. His project has a stated end goal of developing a model system that emulates the ecosystem at Point Reyes National Seashore, where Tule elk are the largest native herbivores.

Another selected fungal project comes from Timothy James of University of Michigan, who will explore the so-called “dark matter fungi” – those not represented in culture collections. By sequencing several dozen species of unculturable zoosporic fungi from freshwater, soils and animal feces, he and his colleagues hope to develop a kingdom-wide fungal phylogenetic framework.

Christian Wurzbacher of Germany’s the Leibniz Institute of Freshwater Ecology and Inland Fisheries, IGB, will characterize fungi from the deep sea to peatlands to freshwater streams to understand the potentially novel adaptations that are necessary to thrive in their aquatic environments. The genomic information would provide information on their metabolic capabilities for breaking down cellulose, lignin and other plant cell wall components, and animal polymers such as keratin and chitin.

Many of the selected projects focus on DOE JGI Flagship Plant Genomes, with most centered on the poplar (Populus trichocarpa.) For example, longtime DOE JGI collaborator Steve DiFazio of West Virginia University is interested in poplar but will study its reproductive development with the help of a close relative, the willow (Salix purpurea). With its shorter generation time, the plant is a good model system and comparator for understanding sex determination, which can help bioenergy crop breeders by, for example, either accelerating or preventing flowering.

Another project comes from Posy Busby of the University of Washington, who will study the interactions between the poplar tree and its fungal, non-pathogenic symbionts or endophytes. As disease-causing pathogens interact with endophytes in leaves, he noted in his proposal, understanding the roles and functions of endophytes could prove useful to meeting future fuel and food requirements.

Along the lines of poplar endophytes, Carolin Frank at UC Merced will investigate the nitrogen-fixing endophytes in poplar, willow, and pine, with the aim of improving growth in grasses and agricultural crops under nutrient-poor conditions.

Rotem Sorek from the Weizmann Institute of Science in Israel takes a different approach starting from the hypothesis that poplar trees have an adaptive immunity system rooted in genome-encoded immune memory. Through deep sequencing of tissues from single poplar trees (some over a century old, others younger) his team hopes to gain insights into the tree genome’s short-term evolution and how its gene expression profiles change over time, as well as to predict how trees might respond under various climate change scenarios.

Tackling a different DOE JGI Flagship Plant Genome, Debbie Laudencia-Chingcuangco of the USDA-ARS will develop a genome-wide collection of several thousand mutants of the model grass Brachypodium distachyon to help domesticate the grasses that are being considered as candidate bioenergy feedstocks. This work is being done in collaboration with researchers at the Great Lakes Bioenergy Research Center, as the team there considers Brachypodium “critical to achieving its mission of developing productive energy crops that can be easily processed into fuels.”

Continuing the theme of candidate bioenergy grasses, Kankshita Swaminathan from the University of Illinois will study gene expression in polyploidy grasses Miscanthus and sugarcane, comparing them against the closely related diploid grass sorghum to understand how these plants recycle nutrients.

Baohong Zhang of East Carolina University also focused on a bioenergy grass, and his project will look at the microRNAs in switchgrass. These regulatory molecules are each just a couple dozen nucleotides in length and can downregulate (decrease the quantity of) a cellular component. With a library of these small transcripts, he and his team hope to identify the gene expression variation associated with desirable biofuel traits in switchgrass such as increased biomass and responses to drought and salinity stressors.

Nitin Baliga of the Institute of Systems Biology will use DOE JGI genome sequences to build a working model of the networks that regulate lipid accumulation in Chlamydomonas reinhardtii, still another DOE JGI Plant Flagship Genome and a model for characterizing biofuel production by algae.

Other accepted projects include:

The study of the genomes of 32 fungi of the Agaricales order, including 16 fungi to be sequenced for the first time, will be carried out by Jose Maria Barrasa of Spain’s University of Alcala. While many of the basidiomycete fungi involved in wood degradation that have been sequenced are from the Polyporales, he noted in his proposal, many of the fungi involved in breaking down leaf litter and buried wood are from the order Agaricales.

Now at the University of Connecticut, Jonathan Klassen conducted postdoctoral studies at GLBRC researcher Cameron Currie’s lab at University of Wisconsin-Madison. His project will study interactions in ant-microbial community fungus gardens in three states to learn more about how the associated bacterial metagenomes contribute to carbon and nitrogen cycling.

Hinsby Cadillo-Quiroz, at Arizona State University, will conduct a study of the microbial communities in the Amazon peatlands to understand their roles in both emitting greenhouse gases and in storing and cycling carbon. The peatlands are hotspots of soil organic carbon accumulation, and in the tropical regions, they are estimated to hold between 11 percent and 14 percent, or nearly 90 gigatons, of the global carbon stored in soils.

Barbara Campbell, Clemson University will study carbon cycling mechanisms of active bacteria and associated viruses in the freshwater to marine transition zone of the Delaware Bay. Understanding the microbes’ metabolism would help researchers understand they capabilities with regard to dealing with contaminants, and their roles in the nitrogen, sulfur and carbon cycles.

Jim Fredrickson of Pacific Northwest National Laboratory will characterize functional profiles of microbial mats in California, Washington and Yellowstone National Park to understand various functions such as how they produce hydrogen and methane, and break down cellulose.

Joyce Loper of USDA-ARS will carry out a comparative analysis of all Pseudomonas bacteria getting from DOE JGI the sequences of just over 100 type strains to infer a evolutionary history of the this genus — a phylogeny — to characterize the genomic diversity, and determine the distribution of genes linked to key observable traits in this non-uniform group of bacteria.

Holly Simon of Oregon Health & Science University is studying microbial populations in the Columbia River estuary, in part to learn how they enhance greenhouse gas CO2 methane and nitrous oxide production.

Michael Thon from Spain’s University of Salamanca will explore sequences of strains of the Colletotrichum species complex, which include fungal pathogens that infect many crops. One of the questions he and his team will ask is how these fungal strains have adapted to break down the range of plant cell wall compositions.

Kathleen Treseder of UC Irvine will study genes involved in sensitivity to higher temperatures in fungi from a warming experiment in an Alaskan boreal forest. The team’s plan is to fold the genomic information gained into a trait-based ecosystem model called DEMENT to predict carbon dioxide emissions under global warming.

Mary Wildermuth of UC Berkeley will study nearly a dozen genomes of powdery mildew fungi, including three that infect designated bioenergy crops. The project will identify the mechanisms by which the fungi successfully infect plants, information that could lead to the development of crops with improved resistance to fungal infection and limiting fungicide use to allow more sustainable agricultural practices.

Several researchers who have previously collaborated with the DOE JGI have new projects:

Ludmila Chistoserdova from the University of Washington had a pioneering collaboration with the DOE JGI to study microbial communities in Lake Washington. In her new project, she and her team will look at the microbes in the Lake Washington sediment to understand their role in metabolizing the potent greenhouse gas methane.

Rick Cavicchioli of Australia’s University of New South Wales will track how microbial communities change throughout a complete annual cycle in three millennia-old Antarctic lakes and a near-shore marine site. By establishing what the microbes do in different seasons, he noted in his proposal, he and his colleagues hope to learn which microbial processes change and about the factors that control the evolution and speciation of marine-derived communities in cold environments.

With samples collected from surface waters down to the deep ocean, Steve Hallam from Canada’s University of British Columbia will explore metabolic pathways and compounds involved in marine carbon cycling processes to understand how carbon is regulated in the oceans.

The project of Hans-Peter Klenk, of DSMZ in Germany, will generate sequences of 1,000 strains of Actinobacteria, which represent the third most populated bacterial phylum and look for genes that encode cellulose-degrading enzymes or enzymes involved in synthesizing novel, natural products.

Han Wosten of the Netherlands’ Utrecht University will carry out a functional genomics approach to wood degradation by looking at Agaricomycetes, in particular the model white rot fungus Schizophyllum commune and the more potent wood-degrading white rots Phanaerochaete chrysosporium and Pleurotus ostreatus that the DOE JGI has previously sequenced.

Wen-Tso Liu of the University of Illinois and his colleagues want to understand the microbial ecology in anaerobic digesters, key components of the wastewater treatment process. They will study microbial communities in anaerobic digesters from the United States, East Asia and Europe to understand the composition and function of the microbes as they are harnessed for this low-cost municipal wastewater strategy efficiently removes waster and produces methane as a sustainable energy source.

Another project that involves wastewater, albeit indirectly, comes from Erica Young of the University of Wisconsin. She has been studying algae grown in wastewater to track how they use nitrogen and phosphorus, and how cellulose and lipids are produced. Her CSP project will characterize the relationship between the algae and the bacteria that help stabilize these algal communities, particularly the diversity of the bacterial community and the pathways and interactions involved in nutrient uptake and carbon sequestration.

Previous CSP projects and other DOE JGI collaborations are highlighted in some of the DOE JGI Annual User Meeting talks that can be seen here: The 10th Annual Genomics of Energy and Environment Meeting will be held March 24-26, 2015 in Walnut Creek, Calif. A preliminary speakers list is posted here ( and registration will be opened in the first week of November.

‘Fracking’ wastewater that is treated for drinking produces potentially harmful compounds

Concerns that fluids from hydraulic fracturing, or “fracking,” are contaminating drinking water abound. Now, scientists are bringing to light another angle that adds to the controversy. A new study, appearing in the ACS journal Environmental Science & Technology, has found that discharge of fracking wastewaters to rivers, even after passage through wastewater treatment plants, could be putting the drinking water supplies of downstream cities at risk.

William A. Mitch, Avner Vengosh and colleagues point out that the disposal of fracking wastewater poses a major challenge for the companies that use the technique, which involves injecting millions of gallons of fluids into shale rock formations to release oil and gas. The resulting wastewater is highly radioactive and contains high levels of heavy metals and salts called halides (bromide, chloride and iodide). One approach to dealing with this wastewater is to treat it in municipal or commercial treatment plants and then release it into rivers and other surface waters. The problem is these plants don’t do a good job at removing halides. Researchers have raised concern that halide-contaminated surface water subsequently treated for drinking purposes with conventional methods, such as chlorination or ozonation, could lead to the formation of toxic byproducts. Mitch’s team set out to see if that was indeed the case.

The researchers diluted river-water samples of fracking wastewater discharged from operations in Pennsylvania and Arkansas, simulating real-world conditions when wastewater gets into the environment. In the lab, they then used current drinking-water disinfection methods on the samples. They found that even at concentrations as low as 0.01 percent up to 0.1 percent by volume of fracking wastewater, an array of toxic compounds formed. Based on their findings, the researchers recommend either that fracking wastewater should not be discharged at all into surface waters or that future water treatment include specific halide-removal techniques.

Solar energy-driven process could revolutionize oil sands tailings reclamation

In this image, University of Alberta civil engineering graduate student Zengquan Shu simulates the solar UV/chlorine treatment process. Laboratory-scale tests found the solar UV/chlorine treatment process removed 75 to 84 per cent of the toxins found in oil sands process affected water. -  UAlberta Civil and Environmental Engineering
In this image, University of Alberta civil engineering graduate student Zengquan Shu simulates the solar UV/chlorine treatment process. Laboratory-scale tests found the solar UV/chlorine treatment process removed 75 to 84 per cent of the toxins found in oil sands process affected water. – UAlberta Civil and Environmental Engineering

Edmonton-Cleaning up oil sands tailings has just gotten a lot greener thanks to a novel technique developed by University of Alberta civil engineering professors that uses solar energy to accelerate tailings pond reclamation efforts by industry.

Instead of using UV lamps as a light source to treat oil sands process affected water (OSPW) retained in tailings ponds, professors Mohamed Gamal El-Din and James Bolton have found that using the sunlight as a renewable energy source treats the wastewater just as efficiently but at a much lower cost.

“We know it works, so now the challenge is to transfer it into the field,” says Gamal El-Din, who also worked on the project with graduate students Zengquan Shu, Chao Li, post doctorate fellow Arvinder Singh and biological sciences professor Miodrag Belosevic.

“This alternative process not only addresses the need for managing these tailings ponds, but it may further be applied to treat municipal wastewater as well. Being a solar-driven process, the cost would be minimal compared to what’s being used in the field now.”

The team’s research findings are published in the Environmental Science and Technology.

Oilsands tailings ponds contain a mixture of suspended solids, salts, and other dissolvable compounds like benzene, acids, and hydrocarbons. Typically, these tailings ponds take 20 plus years before they can be reclaimed.

The solar UV/chlorine treatment process when applied to the tailings ponds would make OSPW decontamination and detoxification immediate.

The sun’s energy will partially remove these organic contaminants due to the direct sunlight. But, when the sunlight reacts with the chlorine (or bleach) added to the wastewater, it produces hydroxyl radicals (powerful oxidative reagents) that remove the remaining toxins more efficiently. The chlorine leaves no residuals as the sunlight causes it to decompose.

In laboratory-scale tests the solar UV/chlorine treatment process was found to remove 75 to 84 per cent of these toxins.

“With this solar process, right now, the wastewater on the top of the tailings ponds is being treated. But because we have nothing in place at the moment to circulate the water, the process isn’t being applied to the rest of the pond,” says Gamal El-Din.

“Because we are limited by the sunlight’s penetration of the water, we now must come up with an innovative design for a mixing system like rafts floating on the ponds that would circulate the water. Installing this would still be much more cost effective for companies. It is expected that the UV/chlorine process will treat the OSPW to the point that the effluent can be fed to a municipal wastewater treatment plant, which will then complete the purification process sufficiently so the water can be discharged safely into rivers.

“This process has been gaining a lot of attention from the oil sands industry. We’re now seeking funds for a pilot-pant demonstration and are looking at commercializing the technology.”

Wastewater injection is culprit for most quakes in southern Colorado and northern New Mexico

The deep injection of wastewater underground is responsible for the dramatic rise in the number of earthquakes in Colorado and New Mexico since 2001, according to a study to be published in the Bulletin of the Seismological Society of America (BSSA).

The Raton Basin, which stretches from southern Colorado into northern New Mexico, was seismically quiet until shortly after major fluid injection began in 1999. Since 2001, there have been 16 magnitude > 3.8 earthquakes (including M 5.0 and 5.3), compared to only one (M 4.0) the previous 30 years. The increase in earthquakes is limited to the area of industrial activity and within 5 kilometers (3.1 miles) of wastewater injection wells.

In 1994, energy companies began producing coal-bed methane in Colorado and expanded production to New Mexico in 1999. Along with the production of methane, there is the production of wastewater, which is injected underground in disposal wells and can raise the pore pressure in the surrounding area, inducing earthquakes. Several lines of evidence suggest the earthquakes in the area are directly related to the disposal of wastewater, a by-product of extracting methane, and not to hydraulic fracturing occurring in the area.

Beginning in 2001, the production of methane expanded, with the number of high-volume wastewater disposal wells increasing (21 presently in Colorado and 7 in New Mexico) along with the injection rate. Since mid-2000, the total injection rate across the basin has ranged from 1.5 to 3.6 million barrels per month.

The authors, all scientists with the U.S. Geological Survey, detail several lines of evidence directly linking the injection wells to the seismicity. The timing and location of seismicity correspond to the documented pattern of injected wastewater. Detailed investigations of two seismic sequences (2001 and 2011) places them in proximity to high-volume, high-injection-rate wells, and both sequences occurred after a nearby increase in the rate of injection. A comparison between seismicity and wastewater injection in Colorado and New Mexico reveals similar patterns, suggesting seismicity is initiated shortly after an increase in injection rates.

Scientists warn time to stop drilling in the dark

In areas where shale-drilling/hydraulic fracturing is heavy, a dense web of roads, pipelines and well pads turn continuous forests and grasslands into fragmented islands. -  Simon Fraser University PAMR
In areas where shale-drilling/hydraulic fracturing is heavy, a dense web of roads, pipelines and well pads turn continuous forests and grasslands into fragmented islands. – Simon Fraser University PAMR

The co-authors of a new study, including two Simon Fraser University research associates, cite new reasons why scientists, industry representatives and policymakers must collaborate closely on minimizing damage to the natural world from shale gas development. Viorel Popescu and Maureen Ryan, David H. Smith Conservation Research Fellows in SFU’s Biological Sciences department, are among eight international co-authors of the newly published research in Frontiers in Ecology and the Environment.

Shale gas development is the extraction of natural gas from shale formations via deep injection of high-pressure aqueous chemicals to create fractures (i.e., hydraulic fracturing), which releases trapped gas. With shale gas production projected to increase exponentially internationally during the next 30 years, the scientists say their key findings are cause for significant concern and decisive mitigation measures.

“Our findings are highly relevant to British Columbians given the impetus for developing shale resources in northeastern B.C. and the massive LNG facilities and pipeline infrastructure under development throughout the province,” notes Popescu. The SFU Earth2Ocean Group member is also a research associate in the Centre for Environmental Research at the University of Bucharest in Romania.

Key study findings:

  • One of the greatest threats to animal and plant-life is the cumulative impact of rapid, widespread shale development, with each individual well contributing collectively to air, water, noise and light pollution.

    “Think about the landscape and its habitats as a canvas,” explains Popescu. “At first, the few well pads, roads and pipelines from shale development seem like tiny holes and cuts, and the canvas still holds. But if you look at a heavily developed landscape down the road, you see more holes and cuts than natural habitats. Forests or grasslands that were once continuous are now islands fragmented by a dense web of roads, pipelines and well pads. At what point does the canvas fall apart? And what are the ecological implications for wide-ranging, sensitive species such as caribou or grizzly bears?”

  • Determining the environmental impact of chemical contamination from spills, well-casing failure and other accidents associated with shale gas production must become a top priority.

    Shale-drilling operations for oil and natural gas have increased by more than 700 per cent in the United States since 2007 and Western Canada is undergoing a similar shale gas production boom. But the industry’s effects on nature and wildlife are not well understood. Accurate data on the release of fracturing chemicals into the environment needs to be gathered before understanding can improve.

  • The lack of accessible and reliable information on spills, wastewater disposal and fracturing fluids is greatly impeding improved understanding. This study identifies that only five of 24 American states with active shale gas reservoirs maintain public records of spills and accidents.

The authors reviewed chemical disclosure statements for 150 wells in three top-gas producing American states and found that, on average, two out of three wells were fractured with at least one undisclosed chemical. Some of the wells in the chemical disclosure registry were fractured with fluid containing 20 or more undisclosed chemicals.

The authors call this an arbitrary and inconsistent standard of chemical disclosure. This is particularly worrisome given the chemical makeup of fracturing fluid and wastewater, which can include carcinogens and radioactive substances, is often unknown.

“Past lessons from large scale resource extraction and energy development -large dams, intensive forestry, or biofuel plantations – have shown us that development that outpaces our understanding of ecological impacts can have dire unintended consequences,” notes Ryan. She is a research fellow in the University of Washington’s School of Environmental and Forest Sciences.

“It’s our responsibility to look forward. For example, here in Canada, moving natural gas from northeastern B.C. to the 16 proposed LNG plants would require hundreds of kilometers of new pipeline and road infrastructure, and large port terminals on top of the effects of drilling. We must not just consider the impact of these projects individually, but also try to evaluate the ecological impacts holistically.”

‘Fracking’ in the dark: Biological fallout of shale-gas production still largely unknown

Eight conservation biologists from various organizations and institutions, including Princeton University, found that shale-gas extraction in the United States has vastly outpaced scientists' understanding of the industry's environmental impact. With shale-gas production projected to surge during the next 30 years, determining and minimizing the industry's effects on nature and wildlife must become a top priority for scientists, industry and policymakers, the researchers said. The photo above shows extensive natural-gas operations at Jonah Field in Wyoming. -  Photo courtesy of EcoFlight.
Eight conservation biologists from various organizations and institutions, including Princeton University, found that shale-gas extraction in the United States has vastly outpaced scientists’ understanding of the industry’s environmental impact. With shale-gas production projected to surge during the next 30 years, determining and minimizing the industry’s effects on nature and wildlife must become a top priority for scientists, industry and policymakers, the researchers said. The photo above shows extensive natural-gas operations at Jonah Field in Wyoming. – Photo courtesy of EcoFlight.

In the United States, natural-gas production from shale rock has increased by more than 700 percent since 2007. Yet scientists still do not fully understand the industry’s effects on nature and wildlife, according to a report in the journal Frontiers in Ecology and the Environment.

As gas extraction continues to vastly outpace scientific examination, a team of eight conservation biologists from various organizations and institutions, including Princeton University, concluded that determining the environmental impact of gas-drilling sites – such as chemical contamination from spills, well-casing failures and other accidents – must be a top research priority.

With shale-gas production projected to surge during the next 30 years, the authors call on scientists, industry representatives and policymakers to cooperate on determining – and minimizing – the damage inflicted on the natural world by gas operations such as hydraulic fracturing, or “fracking.” A major environmental concern, hydraulic fracturing releases natural gas from shale by breaking the rock up with a high-pressure blend of water, sand and other chemicals, which can include carcinogens and radioactive substances.

“We can’t let shale development outpace our understanding of its environmental impacts,” said co-author Morgan Tingley, a postdoctoral research associate in the Program in Science, Technology and Environmental Policy in Princeton’s Woodrow Wilson School of Public and International Affairs.

“The past has taught us that environmental impacts of large-scale development and resource extraction, whether coal plants, large dams or biofuel monocultures, are more than the sum of their parts,” Tingley said.

The researchers found that there are significant “knowledge gaps” when it comes to direct and quantifiable evidence of how the natural world responds to shale-gas operations. A major impediment to research has been the lack of accessible and reliable information on spills, wastewater disposal and the composition of fracturing fluids. Of the 24 American states with active shale-gas reservoirs, only five – Pennsylvania, Colorado, New Mexico, Wyoming and Texas – maintain public records of spills and accidents, the researchers report.

“The Pennsylvania Department of Environmental Protection’s website is one of the best sources of publicly available information on shale-gas spills and accidents in the nation. Even so, gas companies failed to report more than one-third of spills in the last year,” said first author Sara Souther, a postdoctoral research associate at the University of Wisconsin-Madison.

“How many more unreported spills occurred, but were not detected during well inspections?” Souther asked. “We need accurate data on the release of fracturing chemicals into the environment before we can understand impacts to plants and animals.”

One of the greatest threats to animal and plant life identified in the study is the impact of rapid and widespread shale development, which has disproportionately affected rural and natural areas. A single gas well results in the clearance of 3.7 to 7.6 acres (1.5 to 3.1 hectares) of vegetation, and each well contributes to a collective mass of air, water, noise and light pollution that has or can interfere with wild animal health, habitats and reproduction, the researchers report.

“If you look down on a heavily ‘fracked’ landscape, you see a web of well pads, access roads and pipelines that create islands out of what was, in some cases, contiguous habitat,” Souther said. “What are the combined effects of numerous wells and their supporting infrastructure on wide-ranging or sensitive species, like the pronghorn antelope or the hellbender salamander?”

The chemical makeup of fracturing fluid and wastewater is often unknown. The authors reviewed chemical-disclosure statements for 150 wells in three of the top gas-producing states and found that an average of two out of every three wells were fractured with at least one undisclosed chemical. The exact effect of fracturing fluid on natural water systems as well as drinking water supplies remains unclear even though improper wastewater disposal and pollution-prevention measures are among the top state-recorded violations at drilling sites, the researchers found.

“Some of the wells in the chemical disclosure registry were fractured with fluid containing 20 or more undisclosed chemicals,” said senior author Kimberly Terrell, a researcher at the Smithsonian Conservation Biology Institute. “This is an arbitrary and inconsistent standard of chemical disclosure.”

Fracking flowback could pollute groundwater with heavy metals

Partially wetted sand grains (grey) with colloids (red) are shown. -  Cornell University
Partially wetted sand grains (grey) with colloids (red) are shown. – Cornell University

The chemical makeup of wastewater generated by “hydrofracking” could cause the release of tiny particles in soils that often strongly bind heavy metals and pollutants, exacerbating the environmental risks during accidental spills, Cornell University researchers have found.

Previous research has shown 10 to 40 percent of the water and chemical solution mixture injected at high pressure into deep rock strata, surges back to the surface during well development. Scientists at the College of Agriculture and Life Sciences studying the environmental impacts of this “flowback fluid” found that the same properties that make it so effective at extracting natural gas from shale can also displace tiny particles that are naturally bound to soil, causing associated pollutants such as heavy metals to leach out.

They described the mechanisms of this release and transport in a paper published in the American Chemical Society journal Environmental Science & Technology.

The particles they studied are colloids – larger than the size of a molecule but smaller than what can be seen with the naked eye – which cling to sand and soil due to their electric charge.

In experiments, glass columns were filled with sand and synthetic polystyrene colloids. They then flushed the column with different fluids – deionized water as a control, and flowback fluid collected from a Marcellus Shale drilling site – at different rates of flow and measured the amount of colloids that were mobilized.

On a bright field microscope, the polystyrene colloids were visible as red spheres between light-grey sand grains, which made their movement easy to track. The researchers also collected and analyzed the water flowing out of the column to quantify the colloid concentration leaching out.

They found that fewer than five percent of colloids were released when they flushed the columns with deionized water. That figure jumped to 32 to 36 percent when flushed with flowback fluid. Increasing the flow rate of the flowback fluid mobilized an additional 36 percent of colloids.

They believe this is because the chemical composition of the flowback fluid reduced the strength of the forces that allow colloids to remain bound to the sand, causing the colloids to actually be repelled from the sand.

“This is a first step into discovering the effects of flowback fluid on colloid transport in soils,” said postdoctoral associate Cathelijne Stoof, a co-author on the paper.

The authors hope to conduct further experiments using naturally occurring colloids in more complex field soil systems, as well as different formulations of flowback fluid collected from other drilling sites.

Stoof said awareness of the phenomenon and an understanding of the mechanisms behind it can help identify risks and inform mitigation strategies.

“Sustainable development of any resource requires facts about its potential impacts, so legislators can make informed decisions about whether and where it can and cannot be allowed, and to develop guidelines in case it goes wrong,” Stoof said. “In the case of spills, you want to know what happens when the fluid moves through the soil.”

Click on this image to view the .mp4 video
This video visualizes the effects of hydrofracking flowback fluid on colloid mobilization in unsaturated sand. Included are the injection of the colloids into the sand column at the beginning of the experiment, the deionized water flush at 0.3 ml/min, the flowback water flush at 0.3 ml/min, and the flowback water flush at 1.5 ml/min. – Cornell University