Climate change was not to blame for the collapse of the Bronze Age

Scientists will have to find alternative explanations for a huge population collapse in Europe at the end of the Bronze Age as researchers prove definitively that climate change – commonly assumed to be responsible – could not have been the culprit.

Archaeologists and environmental scientists from the University of Bradford, University of Leeds, University College Cork, Ireland (UCC), and Queen’s University Belfast have shown that the changes in climate that scientists believed to coincide with the fall in population in fact occurred at least two generations later.

Their results, published this week in Proceedings of the National Academy of Sciences, show that human activity starts to decline after 900BC, and falls rapidly after 800BC, indicating a population collapse. But the climate records show that colder, wetter conditions didn’t occur until around two generations later.

Fluctuations in levels of human activity through time are reflected by the numbers of radiocarbon dates for a given period. The team used new statistical techniques to analyse more than 2000 radiocarbon dates, taken from hundreds of archaeological sites in Ireland, to pinpoint the precise dates that Europe’s Bronze Age population collapse occurred.

The team then analysed past climate records from peat bogs in Ireland and compared the archaeological data to these climate records to see if the dates tallied. That information was then compared with evidence of climate change across NW Europe between 1200 and 500 BC.

“Our evidence shows definitively that the population decline in this period cannot have been caused by climate change,” says Ian Armit, Professor of Archaeology at the University of Bradford, and lead author of the study.

Graeme Swindles, Associate Professor of Earth System Dynamics at the University of Leeds, added, “We found clear evidence for a rapid change in climate to much wetter conditions, which we were able to precisely pinpoint to 750BC using statistical methods.”

According to Professor Armit, social and economic stress is more likely to be the cause of the sudden and widespread fall in numbers. Communities producing bronze needed to trade over very large distances to obtain copper and tin. Control of these networks enabled the growth of complex, hierarchical societies dominated by a warrior elite. As iron production took over, these networks collapsed, leading to widespread conflict and social collapse. It may be these unstable social conditions, rather than climate change, that led to the population collapse at the end of the Bronze Age.

According to Katharina Becker, Lecturer in the Department of Archaeology at UCC, the Late Bronze Age is usually seen as a time of plenty, in contrast to an impoverished Early Iron Age. “Our results show that the rich Bronze Age artefact record does not provide the full picture and that crisis began earlier than previously thought,” she says.

“Although climate change was not directly responsible for the collapse it is likely that the poor climatic conditions would have affected farming,” adds Professor Armit. “This would have been particularly difficult for vulnerable communities, preventing population recovery for several centuries.”

The findings have significance for modern day climate change debates which, argues Professor Armit, are often too quick to link historical climate events with changes in population.

“The impact of climate change on humans is a huge concern today as we monitor rising temperatures globally,” says Professor Armit.

“Often, in examining the past, we are inclined to link evidence of climate change with evidence of population change. Actually, if you have high quality data and apply modern analytical techniques, you get a much clearer picture and start to see the real complexity of human/environment relationships in the past.”

Climate change was not to blame for the collapse of the Bronze Age

Scientists will have to find alternative explanations for a huge population collapse in Europe at the end of the Bronze Age as researchers prove definitively that climate change – commonly assumed to be responsible – could not have been the culprit.

Archaeologists and environmental scientists from the University of Bradford, University of Leeds, University College Cork, Ireland (UCC), and Queen’s University Belfast have shown that the changes in climate that scientists believed to coincide with the fall in population in fact occurred at least two generations later.

Their results, published this week in Proceedings of the National Academy of Sciences, show that human activity starts to decline after 900BC, and falls rapidly after 800BC, indicating a population collapse. But the climate records show that colder, wetter conditions didn’t occur until around two generations later.

Fluctuations in levels of human activity through time are reflected by the numbers of radiocarbon dates for a given period. The team used new statistical techniques to analyse more than 2000 radiocarbon dates, taken from hundreds of archaeological sites in Ireland, to pinpoint the precise dates that Europe’s Bronze Age population collapse occurred.

The team then analysed past climate records from peat bogs in Ireland and compared the archaeological data to these climate records to see if the dates tallied. That information was then compared with evidence of climate change across NW Europe between 1200 and 500 BC.

“Our evidence shows definitively that the population decline in this period cannot have been caused by climate change,” says Ian Armit, Professor of Archaeology at the University of Bradford, and lead author of the study.

Graeme Swindles, Associate Professor of Earth System Dynamics at the University of Leeds, added, “We found clear evidence for a rapid change in climate to much wetter conditions, which we were able to precisely pinpoint to 750BC using statistical methods.”

According to Professor Armit, social and economic stress is more likely to be the cause of the sudden and widespread fall in numbers. Communities producing bronze needed to trade over very large distances to obtain copper and tin. Control of these networks enabled the growth of complex, hierarchical societies dominated by a warrior elite. As iron production took over, these networks collapsed, leading to widespread conflict and social collapse. It may be these unstable social conditions, rather than climate change, that led to the population collapse at the end of the Bronze Age.

According to Katharina Becker, Lecturer in the Department of Archaeology at UCC, the Late Bronze Age is usually seen as a time of plenty, in contrast to an impoverished Early Iron Age. “Our results show that the rich Bronze Age artefact record does not provide the full picture and that crisis began earlier than previously thought,” she says.

“Although climate change was not directly responsible for the collapse it is likely that the poor climatic conditions would have affected farming,” adds Professor Armit. “This would have been particularly difficult for vulnerable communities, preventing population recovery for several centuries.”

The findings have significance for modern day climate change debates which, argues Professor Armit, are often too quick to link historical climate events with changes in population.

“The impact of climate change on humans is a huge concern today as we monitor rising temperatures globally,” says Professor Armit.

“Often, in examining the past, we are inclined to link evidence of climate change with evidence of population change. Actually, if you have high quality data and apply modern analytical techniques, you get a much clearer picture and start to see the real complexity of human/environment relationships in the past.”

Massive geographic change may have triggered explosion of animal life

A new analysis from The University of Texas at Austin's Institute for Geophysics suggests a deep oceanic gateway, shown in blue, developed between the Pacific and Iapetus oceans immediately before the Cambrian sea level rise and explosion of life in the fossil record, isolating Laurentia from the supercontinent Gondwanaland. -  Ian Dalziel
A new analysis from The University of Texas at Austin’s Institute for Geophysics suggests a deep oceanic gateway, shown in blue, developed between the Pacific and Iapetus oceans immediately before the Cambrian sea level rise and explosion of life in the fossil record, isolating Laurentia from the supercontinent Gondwanaland. – Ian Dalziel

A new analysis of geologic history may help solve the riddle of the “Cambrian explosion,” the rapid diversification of animal life in the fossil record 530 million years ago that has puzzled scientists since the time of Charles Darwin.

A paper by Ian Dalziel of The University of Texas at Austin’s Jackson School of Geosciences, published in the November issue of Geology, a journal of the Geological Society of America, suggests a major tectonic event may have triggered the rise in sea level and other environmental changes that accompanied the apparent burst of life.

The Cambrian explosion is one of the most significant events in Earth’s 4.5-billion-year history. The surge of evolution led to the sudden appearance of almost all modern animal groups. Fossils from the Cambrian explosion document the rapid evolution of life on Earth, but its cause has been a mystery.

The sudden burst of new life is also called “Darwin’s dilemma” because it appears to contradict Charles Darwin’s hypothesis of gradual evolution by natural selection.

“At the boundary between the Precambrian and Cambrian periods, something big happened tectonically that triggered the spreading of shallow ocean water across the continents, which is clearly tied in time and space to the sudden explosion of multicellular, hard-shelled life on the planet,” said Dalziel, a research professor at the Institute for Geophysics and a professor in the Department of Geological Sciences.

Beyond the sea level rise itself, the ancient geologic and geographic changes probably led to a buildup of oxygen in the atmosphere and a change in ocean chemistry, allowing more complex life-forms to evolve, he said.

The paper is the first to integrate geological evidence from five present-day continents — North America, South America, Africa, Australia and Antarctica — in addressing paleogeography at that critical time.

Dalziel proposes that present-day North America was still attached to the southern continents until sometime into the Cambrian period. Current reconstructions of the globe’s geography during the early Cambrian show the ancient continent of Laurentia — the ancestral core of North America — as already having separated from the supercontinent Gondwanaland.

In contrast, Dalziel suggests the development of a deep oceanic gateway between the Pacific and Iapetus (ancestral Atlantic) oceans isolated Laurentia in the early Cambrian, a geographic makeover that immediately preceded the global sea level rise and apparent explosion of life.

“The reason people didn’t make this connection before was because they hadn’t looked at all the rock records on the different present-day continents,” he said.

The rock record in Antarctica, for example, comes from the very remote Ellsworth Mountains.

“People have wondered for a long time what rifted off there, and I think it was probably North America, opening up this deep seaway,” Dalziel said. “It appears ancient North America was initially attached to Antarctica and part of South America, not to Europe and Africa, as has been widely believed.”

Although the new analysis adds to evidence suggesting a massive tectonic shift caused the seas to rise more than half a billion years ago, Dalziel said more research is needed to determine whether this new chain of paleogeographic events can truly explain the sudden rise of multicellular life in the fossil record.

“I’m not claiming this is the ultimate explanation of the Cambrian explosion,” Dalziel said. “But it may help to explain what was happening at that time.”

###

To read the paper go to http://geology.gsapubs.org/content/early/2014/09/25/G35886.1.abstract

Massive geographic change may have triggered explosion of animal life

A new analysis from The University of Texas at Austin's Institute for Geophysics suggests a deep oceanic gateway, shown in blue, developed between the Pacific and Iapetus oceans immediately before the Cambrian sea level rise and explosion of life in the fossil record, isolating Laurentia from the supercontinent Gondwanaland. -  Ian Dalziel
A new analysis from The University of Texas at Austin’s Institute for Geophysics suggests a deep oceanic gateway, shown in blue, developed between the Pacific and Iapetus oceans immediately before the Cambrian sea level rise and explosion of life in the fossil record, isolating Laurentia from the supercontinent Gondwanaland. – Ian Dalziel

A new analysis of geologic history may help solve the riddle of the “Cambrian explosion,” the rapid diversification of animal life in the fossil record 530 million years ago that has puzzled scientists since the time of Charles Darwin.

A paper by Ian Dalziel of The University of Texas at Austin’s Jackson School of Geosciences, published in the November issue of Geology, a journal of the Geological Society of America, suggests a major tectonic event may have triggered the rise in sea level and other environmental changes that accompanied the apparent burst of life.

The Cambrian explosion is one of the most significant events in Earth’s 4.5-billion-year history. The surge of evolution led to the sudden appearance of almost all modern animal groups. Fossils from the Cambrian explosion document the rapid evolution of life on Earth, but its cause has been a mystery.

The sudden burst of new life is also called “Darwin’s dilemma” because it appears to contradict Charles Darwin’s hypothesis of gradual evolution by natural selection.

“At the boundary between the Precambrian and Cambrian periods, something big happened tectonically that triggered the spreading of shallow ocean water across the continents, which is clearly tied in time and space to the sudden explosion of multicellular, hard-shelled life on the planet,” said Dalziel, a research professor at the Institute for Geophysics and a professor in the Department of Geological Sciences.

Beyond the sea level rise itself, the ancient geologic and geographic changes probably led to a buildup of oxygen in the atmosphere and a change in ocean chemistry, allowing more complex life-forms to evolve, he said.

The paper is the first to integrate geological evidence from five present-day continents — North America, South America, Africa, Australia and Antarctica — in addressing paleogeography at that critical time.

Dalziel proposes that present-day North America was still attached to the southern continents until sometime into the Cambrian period. Current reconstructions of the globe’s geography during the early Cambrian show the ancient continent of Laurentia — the ancestral core of North America — as already having separated from the supercontinent Gondwanaland.

In contrast, Dalziel suggests the development of a deep oceanic gateway between the Pacific and Iapetus (ancestral Atlantic) oceans isolated Laurentia in the early Cambrian, a geographic makeover that immediately preceded the global sea level rise and apparent explosion of life.

“The reason people didn’t make this connection before was because they hadn’t looked at all the rock records on the different present-day continents,” he said.

The rock record in Antarctica, for example, comes from the very remote Ellsworth Mountains.

“People have wondered for a long time what rifted off there, and I think it was probably North America, opening up this deep seaway,” Dalziel said. “It appears ancient North America was initially attached to Antarctica and part of South America, not to Europe and Africa, as has been widely believed.”

Although the new analysis adds to evidence suggesting a massive tectonic shift caused the seas to rise more than half a billion years ago, Dalziel said more research is needed to determine whether this new chain of paleogeographic events can truly explain the sudden rise of multicellular life in the fossil record.

“I’m not claiming this is the ultimate explanation of the Cambrian explosion,” Dalziel said. “But it may help to explain what was happening at that time.”

###

To read the paper go to http://geology.gsapubs.org/content/early/2014/09/25/G35886.1.abstract

Scientists discover carbonate rocks are unrecognized methane sink

Since the first undersea methane seep was discovered 30 years ago, scientists have meticulously analyzed and measured how microbes in the seafloor sediments consume the greenhouse gas methane as part of understanding how the Earth works.

The sediment-based microbes form an important methane “sink,” preventing much of the chemical from reaching the atmosphere and contributing to greenhouse gas accumulation. As a byproduct of this process, the microbes create a type of rock known as authigenic carbonate, which while interesting to scientists was not thought to be involved in the processing of methane.

That is no longer the case. A team of scientists has discovered that these authigenic carbonate rocks also contain vast amounts of active microbes that take up methane. The results of their study, which was funded by the National Science Foundation, were reported today in the journal Nature Communications.

“No one had really examined these rocks as living habitats before,” noted Andrew Thurber, an Oregon State University marine ecologist and co-author on the paper. “It was just assumed that they were inactive. In previous studies, we had seen remnants of microbes in the rocks – DNA and lipids – but we thought they were relics of past activity. We didn’t know they were active.

“This goes to show how the global methane process is still rather poorly understood,” Thurber added.

Lead author Jeffrey Marlow of the California Institute of Technology and his colleagues studied samples from authigenic compounds off the coasts of the Pacific Northwest (Hydrate Ridge), northern California (Eel River Basin) and central America (the Costa Rica margin). The rocks range in size and distribution from small pebbles to carbonate “pavement” stretching dozens of square miles.

“Methane-derived carbonates represent a large volume within many seep systems and finding active methane-consuming archaea and bacteria in the interior of these carbonate rocks extends the known habitat for methane-consuming microorganisms beyond the relatively thin layer of sediment that may overlay a carbonate mound,” said Marlow, a geobiology graduate student in the lab of Victoria Orphan of Caltech.

These assemblages are also found in the Gulf of Mexico as well as off Chile, New Zealand, Africa, Europe – “and pretty much every ocean basin in the world,” noted Thurber, an assistant professor (senior research) in Oregon State’s College of Earth, Ocean, and Atmospheric Sciences.

The study is important, scientists say, because the rock-based microbes potentially may consume a huge amount of methane. The microbes were less active than those found in the sediment, but were more abundant – and the areas they inhabit are extensive, making their importance potential enormous. Studies have found that approximately 3-6 percent of the methane in the atmosphere is from marine sources – and this number is so low due to microbes in the ocean sediments consuming some 60-90 percent of the methane that would otherwise escape.

Now those ratios will have to be re-examined to determine how much of the methane sink can be attributed to microbes in rocks versus those in sediments. The distinction is important, the researchers say, because it is an unrecognized sink for a potentially very important greenhouse gas.

“We found that these carbonate rocks located in areas of active methane seeps are themselves more active,” Thurber said. “Rocks located in comparatively inactive regions had little microbial activity. However, they can quickly activate when methane becomes available.

“In some ways, these rocks are like armies waiting in the wings to be called upon when needed to absorb methane.”

The ocean contains vast amounts of methane, which has long been a concern to scientists. Marine reservoirs of methane are estimated to total more than 455 gigatons and may be as much as 10,000 gigatons carbon in methane. A gigaton is approximate 1.1 billion tons.

By contrast, all of the planet’s gas and oil deposits are thought to total about 200-300 gigatons of carbon.

Scientists discover carbonate rocks are unrecognized methane sink

Since the first undersea methane seep was discovered 30 years ago, scientists have meticulously analyzed and measured how microbes in the seafloor sediments consume the greenhouse gas methane as part of understanding how the Earth works.

The sediment-based microbes form an important methane “sink,” preventing much of the chemical from reaching the atmosphere and contributing to greenhouse gas accumulation. As a byproduct of this process, the microbes create a type of rock known as authigenic carbonate, which while interesting to scientists was not thought to be involved in the processing of methane.

That is no longer the case. A team of scientists has discovered that these authigenic carbonate rocks also contain vast amounts of active microbes that take up methane. The results of their study, which was funded by the National Science Foundation, were reported today in the journal Nature Communications.

“No one had really examined these rocks as living habitats before,” noted Andrew Thurber, an Oregon State University marine ecologist and co-author on the paper. “It was just assumed that they were inactive. In previous studies, we had seen remnants of microbes in the rocks – DNA and lipids – but we thought they were relics of past activity. We didn’t know they were active.

“This goes to show how the global methane process is still rather poorly understood,” Thurber added.

Lead author Jeffrey Marlow of the California Institute of Technology and his colleagues studied samples from authigenic compounds off the coasts of the Pacific Northwest (Hydrate Ridge), northern California (Eel River Basin) and central America (the Costa Rica margin). The rocks range in size and distribution from small pebbles to carbonate “pavement” stretching dozens of square miles.

“Methane-derived carbonates represent a large volume within many seep systems and finding active methane-consuming archaea and bacteria in the interior of these carbonate rocks extends the known habitat for methane-consuming microorganisms beyond the relatively thin layer of sediment that may overlay a carbonate mound,” said Marlow, a geobiology graduate student in the lab of Victoria Orphan of Caltech.

These assemblages are also found in the Gulf of Mexico as well as off Chile, New Zealand, Africa, Europe – “and pretty much every ocean basin in the world,” noted Thurber, an assistant professor (senior research) in Oregon State’s College of Earth, Ocean, and Atmospheric Sciences.

The study is important, scientists say, because the rock-based microbes potentially may consume a huge amount of methane. The microbes were less active than those found in the sediment, but were more abundant – and the areas they inhabit are extensive, making their importance potential enormous. Studies have found that approximately 3-6 percent of the methane in the atmosphere is from marine sources – and this number is so low due to microbes in the ocean sediments consuming some 60-90 percent of the methane that would otherwise escape.

Now those ratios will have to be re-examined to determine how much of the methane sink can be attributed to microbes in rocks versus those in sediments. The distinction is important, the researchers say, because it is an unrecognized sink for a potentially very important greenhouse gas.

“We found that these carbonate rocks located in areas of active methane seeps are themselves more active,” Thurber said. “Rocks located in comparatively inactive regions had little microbial activity. However, they can quickly activate when methane becomes available.

“In some ways, these rocks are like armies waiting in the wings to be called upon when needed to absorb methane.”

The ocean contains vast amounts of methane, which has long been a concern to scientists. Marine reservoirs of methane are estimated to total more than 455 gigatons and may be as much as 10,000 gigatons carbon in methane. A gigaton is approximate 1.1 billion tons.

By contrast, all of the planet’s gas and oil deposits are thought to total about 200-300 gigatons of carbon.

2015 DOE JGI’s science portfolio delves deeper into the Earth’s data mine

The U.S. Department of Energy Joint Genome Institute (DOE JGI), a DOE Office of Science user facility, has announced that 32 new projects have been selected for the 2015 Community Science Program (CSP). From sampling Antarctic lakes to Caribbean waters, and from plant root micro-ecosystems, to the subsurface underneath the water table in forested watersheds, the CSP 2015 projects portfolio highlights diverse environments where DOE mission-relevant science can be extracted.

“These projects catalyze JGI’s strategic shift in emphasis from solving an organism’s genome sequence to enabling an understanding of what this information enables organisms to do,” said Jim Bristow, DOE JGI Science Deputy who oversees the CSP. “To accomplish this, the projects selected combine DNA sequencing with large-scale experimental and computational capabilities, and in some cases include JGI’s new capability to write DNA in addition to reading it. These projects will expand research communities, and help to meet the DOE JGI imperative to translate sequence to function and ultimately into solutions for major energy and environmental problems.”

The CSP 2015 projects were selected by an external review panel from 76 full proposals received that resulted from 85 letters of intent submitted. The total allocation for the CSP 2015 portfolio is expected to exceed 60 trillion bases (terabases or Tb)-or the equivalent of 20,000 human genomes of plant, fungal and microbial genome sequences. The full list of projects may be found at http://jgi.doe.gov/our-projects/csp-plans/fy-2015-csp-plans/. The DOE JGI Community Science Program also accepts proposals for smaller-scale microbial, resequencing and DNA synthesis projects and reviews them twice a year. The CSP advances projects that harness DOE JGI’s capability in massive-scale DNA sequencing, analysis and synthesis in support of the DOE missions in alternative energy, global carbon cycling, and biogeochemistry.

Among the CSP 2015 projects selected is one from Regina Lamendella of Juniata College, who will investigate how microbial communities in Marcellus shale, the country’s largest shale gas field, respond to hydraulic fracturing and natural gas extraction. For example, as fracking uses chemicals, researchers are interested in how the microbial communities can break down environmental contaminants, and how they respond to the release of methane during oil extraction operations.

Some 1,500 miles south from those gas extraction sites, Monica Medina-Munoz of Penn State University will study the effect of thermal stress on the Caribbean coral Orbicella faveolata and the metabolic contribution of its coral host Symbiodinium. The calcium carbonate in coral reefs acts as carbon sinks, but reef health depends on microbial communities. If the photosynthetic symbionts are removed from the coral host, for example, the corals can die and calcification rates decrease. Understanding how to maintain stability in the coral-microbiome community can provide information on the coral’s contribution to the global ocean carbon cycle.

Longtime DOE JGI collaborator Jill Banfield of the University of California (UC), Berkeley is profiling the diversity of microbial communities found in the subsurface from the Rifle aquifer adjacent to the Colorado River. The subsurface is a massive, yet poorly understood, repository of organic carbon as well as greenhouse gases. Another research question, based on having the microbial populations close to both the water table and the river, is how they impact carbon, nitrogen and sulfur cycles. Her project is part of the first coordinated attempt to quantify the metabolic potential of an entire subsurface ecosystem under the aegis of the Lawrence Berkeley National Laboratory’s Subsurface Biogeochemistry Scientific Focus Area.

Banfield also successfully competed for a second CSP project to characterize the tree-root microbial interactions that occur below the soil mantle in the unsaturated zone or vadose zone, which extends into unweathered bedrock. The project’s goal is to understand how microbial communities this deep underground influence tree-based carbon fixation in forested watersheds by the Eel River in northwestern California.

Several fungal projects were selected for the 2015 CSP portfolio, including one led by Kabir Peay of Stanford University. He and his colleagues will study how fungal communities in animal feces decompose organic matter. His project has a stated end goal of developing a model system that emulates the ecosystem at Point Reyes National Seashore, where Tule elk are the largest native herbivores.

Another selected fungal project comes from Timothy James of University of Michigan, who will explore the so-called “dark matter fungi” – those not represented in culture collections. By sequencing several dozen species of unculturable zoosporic fungi from freshwater, soils and animal feces, he and his colleagues hope to develop a kingdom-wide fungal phylogenetic framework.

Christian Wurzbacher of Germany’s the Leibniz Institute of Freshwater Ecology and Inland Fisheries, IGB, will characterize fungi from the deep sea to peatlands to freshwater streams to understand the potentially novel adaptations that are necessary to thrive in their aquatic environments. The genomic information would provide information on their metabolic capabilities for breaking down cellulose, lignin and other plant cell wall components, and animal polymers such as keratin and chitin.

Many of the selected projects focus on DOE JGI Flagship Plant Genomes, with most centered on the poplar (Populus trichocarpa.) For example, longtime DOE JGI collaborator Steve DiFazio of West Virginia University is interested in poplar but will study its reproductive development with the help of a close relative, the willow (Salix purpurea). With its shorter generation time, the plant is a good model system and comparator for understanding sex determination, which can help bioenergy crop breeders by, for example, either accelerating or preventing flowering.

Another project comes from Posy Busby of the University of Washington, who will study the interactions between the poplar tree and its fungal, non-pathogenic symbionts or endophytes. As disease-causing pathogens interact with endophytes in leaves, he noted in his proposal, understanding the roles and functions of endophytes could prove useful to meeting future fuel and food requirements.

Along the lines of poplar endophytes, Carolin Frank at UC Merced will investigate the nitrogen-fixing endophytes in poplar, willow, and pine, with the aim of improving growth in grasses and agricultural crops under nutrient-poor conditions.

Rotem Sorek from the Weizmann Institute of Science in Israel takes a different approach starting from the hypothesis that poplar trees have an adaptive immunity system rooted in genome-encoded immune memory. Through deep sequencing of tissues from single poplar trees (some over a century old, others younger) his team hopes to gain insights into the tree genome’s short-term evolution and how its gene expression profiles change over time, as well as to predict how trees might respond under various climate change scenarios.

Tackling a different DOE JGI Flagship Plant Genome, Debbie Laudencia-Chingcuangco of the USDA-ARS will develop a genome-wide collection of several thousand mutants of the model grass Brachypodium distachyon to help domesticate the grasses that are being considered as candidate bioenergy feedstocks. This work is being done in collaboration with researchers at the Great Lakes Bioenergy Research Center, as the team there considers Brachypodium “critical to achieving its mission of developing productive energy crops that can be easily processed into fuels.”

Continuing the theme of candidate bioenergy grasses, Kankshita Swaminathan from the University of Illinois will study gene expression in polyploidy grasses Miscanthus and sugarcane, comparing them against the closely related diploid grass sorghum to understand how these plants recycle nutrients.

Baohong Zhang of East Carolina University also focused on a bioenergy grass, and his project will look at the microRNAs in switchgrass. These regulatory molecules are each just a couple dozen nucleotides in length and can downregulate (decrease the quantity of) a cellular component. With a library of these small transcripts, he and his team hope to identify the gene expression variation associated with desirable biofuel traits in switchgrass such as increased biomass and responses to drought and salinity stressors.

Nitin Baliga of the Institute of Systems Biology will use DOE JGI genome sequences to build a working model of the networks that regulate lipid accumulation in Chlamydomonas reinhardtii, still another DOE JGI Plant Flagship Genome and a model for characterizing biofuel production by algae.

Other accepted projects include:

The study of the genomes of 32 fungi of the Agaricales order, including 16 fungi to be sequenced for the first time, will be carried out by Jose Maria Barrasa of Spain’s University of Alcala. While many of the basidiomycete fungi involved in wood degradation that have been sequenced are from the Polyporales, he noted in his proposal, many of the fungi involved in breaking down leaf litter and buried wood are from the order Agaricales.

Now at the University of Connecticut, Jonathan Klassen conducted postdoctoral studies at GLBRC researcher Cameron Currie’s lab at University of Wisconsin-Madison. His project will study interactions in ant-microbial community fungus gardens in three states to learn more about how the associated bacterial metagenomes contribute to carbon and nitrogen cycling.

Hinsby Cadillo-Quiroz, at Arizona State University, will conduct a study of the microbial communities in the Amazon peatlands to understand their roles in both emitting greenhouse gases and in storing and cycling carbon. The peatlands are hotspots of soil organic carbon accumulation, and in the tropical regions, they are estimated to hold between 11 percent and 14 percent, or nearly 90 gigatons, of the global carbon stored in soils.

Barbara Campbell, Clemson University will study carbon cycling mechanisms of active bacteria and associated viruses in the freshwater to marine transition zone of the Delaware Bay. Understanding the microbes’ metabolism would help researchers understand they capabilities with regard to dealing with contaminants, and their roles in the nitrogen, sulfur and carbon cycles.

Jim Fredrickson of Pacific Northwest National Laboratory will characterize functional profiles of microbial mats in California, Washington and Yellowstone National Park to understand various functions such as how they produce hydrogen and methane, and break down cellulose.

Joyce Loper of USDA-ARS will carry out a comparative analysis of all Pseudomonas bacteria getting from DOE JGI the sequences of just over 100 type strains to infer a evolutionary history of the this genus — a phylogeny — to characterize the genomic diversity, and determine the distribution of genes linked to key observable traits in this non-uniform group of bacteria.

Holly Simon of Oregon Health & Science University is studying microbial populations in the Columbia River estuary, in part to learn how they enhance greenhouse gas CO2 methane and nitrous oxide production.

Michael Thon from Spain’s University of Salamanca will explore sequences of strains of the Colletotrichum species complex, which include fungal pathogens that infect many crops. One of the questions he and his team will ask is how these fungal strains have adapted to break down the range of plant cell wall compositions.

Kathleen Treseder of UC Irvine will study genes involved in sensitivity to higher temperatures in fungi from a warming experiment in an Alaskan boreal forest. The team’s plan is to fold the genomic information gained into a trait-based ecosystem model called DEMENT to predict carbon dioxide emissions under global warming.

Mary Wildermuth of UC Berkeley will study nearly a dozen genomes of powdery mildew fungi, including three that infect designated bioenergy crops. The project will identify the mechanisms by which the fungi successfully infect plants, information that could lead to the development of crops with improved resistance to fungal infection and limiting fungicide use to allow more sustainable agricultural practices.

Several researchers who have previously collaborated with the DOE JGI have new projects:

Ludmila Chistoserdova from the University of Washington had a pioneering collaboration with the DOE JGI to study microbial communities in Lake Washington. In her new project, she and her team will look at the microbes in the Lake Washington sediment to understand their role in metabolizing the potent greenhouse gas methane.

Rick Cavicchioli of Australia’s University of New South Wales will track how microbial communities change throughout a complete annual cycle in three millennia-old Antarctic lakes and a near-shore marine site. By establishing what the microbes do in different seasons, he noted in his proposal, he and his colleagues hope to learn which microbial processes change and about the factors that control the evolution and speciation of marine-derived communities in cold environments.

With samples collected from surface waters down to the deep ocean, Steve Hallam from Canada’s University of British Columbia will explore metabolic pathways and compounds involved in marine carbon cycling processes to understand how carbon is regulated in the oceans.

The project of Hans-Peter Klenk, of DSMZ in Germany, will generate sequences of 1,000 strains of Actinobacteria, which represent the third most populated bacterial phylum and look for genes that encode cellulose-degrading enzymes or enzymes involved in synthesizing novel, natural products.

Han Wosten of the Netherlands’ Utrecht University will carry out a functional genomics approach to wood degradation by looking at Agaricomycetes, in particular the model white rot fungus Schizophyllum commune and the more potent wood-degrading white rots Phanaerochaete chrysosporium and Pleurotus ostreatus that the DOE JGI has previously sequenced.

Wen-Tso Liu of the University of Illinois and his colleagues want to understand the microbial ecology in anaerobic digesters, key components of the wastewater treatment process. They will study microbial communities in anaerobic digesters from the United States, East Asia and Europe to understand the composition and function of the microbes as they are harnessed for this low-cost municipal wastewater strategy efficiently removes waster and produces methane as a sustainable energy source.

Another project that involves wastewater, albeit indirectly, comes from Erica Young of the University of Wisconsin. She has been studying algae grown in wastewater to track how they use nitrogen and phosphorus, and how cellulose and lipids are produced. Her CSP project will characterize the relationship between the algae and the bacteria that help stabilize these algal communities, particularly the diversity of the bacterial community and the pathways and interactions involved in nutrient uptake and carbon sequestration.

Previous CSP projects and other DOE JGI collaborations are highlighted in some of the DOE JGI Annual User Meeting talks that can be seen here: http://usermeeting.jgi.doe.gov/past-speakers/. The 10th Annual Genomics of Energy and Environment Meeting will be held March 24-26, 2015 in Walnut Creek, Calif. A preliminary speakers list is posted here (http://usermeeting.jgi.doe.gov/) and registration will be opened in the first week of November.

2015 DOE JGI’s science portfolio delves deeper into the Earth’s data mine

The U.S. Department of Energy Joint Genome Institute (DOE JGI), a DOE Office of Science user facility, has announced that 32 new projects have been selected for the 2015 Community Science Program (CSP). From sampling Antarctic lakes to Caribbean waters, and from plant root micro-ecosystems, to the subsurface underneath the water table in forested watersheds, the CSP 2015 projects portfolio highlights diverse environments where DOE mission-relevant science can be extracted.

“These projects catalyze JGI’s strategic shift in emphasis from solving an organism’s genome sequence to enabling an understanding of what this information enables organisms to do,” said Jim Bristow, DOE JGI Science Deputy who oversees the CSP. “To accomplish this, the projects selected combine DNA sequencing with large-scale experimental and computational capabilities, and in some cases include JGI’s new capability to write DNA in addition to reading it. These projects will expand research communities, and help to meet the DOE JGI imperative to translate sequence to function and ultimately into solutions for major energy and environmental problems.”

The CSP 2015 projects were selected by an external review panel from 76 full proposals received that resulted from 85 letters of intent submitted. The total allocation for the CSP 2015 portfolio is expected to exceed 60 trillion bases (terabases or Tb)-or the equivalent of 20,000 human genomes of plant, fungal and microbial genome sequences. The full list of projects may be found at http://jgi.doe.gov/our-projects/csp-plans/fy-2015-csp-plans/. The DOE JGI Community Science Program also accepts proposals for smaller-scale microbial, resequencing and DNA synthesis projects and reviews them twice a year. The CSP advances projects that harness DOE JGI’s capability in massive-scale DNA sequencing, analysis and synthesis in support of the DOE missions in alternative energy, global carbon cycling, and biogeochemistry.

Among the CSP 2015 projects selected is one from Regina Lamendella of Juniata College, who will investigate how microbial communities in Marcellus shale, the country’s largest shale gas field, respond to hydraulic fracturing and natural gas extraction. For example, as fracking uses chemicals, researchers are interested in how the microbial communities can break down environmental contaminants, and how they respond to the release of methane during oil extraction operations.

Some 1,500 miles south from those gas extraction sites, Monica Medina-Munoz of Penn State University will study the effect of thermal stress on the Caribbean coral Orbicella faveolata and the metabolic contribution of its coral host Symbiodinium. The calcium carbonate in coral reefs acts as carbon sinks, but reef health depends on microbial communities. If the photosynthetic symbionts are removed from the coral host, for example, the corals can die and calcification rates decrease. Understanding how to maintain stability in the coral-microbiome community can provide information on the coral’s contribution to the global ocean carbon cycle.

Longtime DOE JGI collaborator Jill Banfield of the University of California (UC), Berkeley is profiling the diversity of microbial communities found in the subsurface from the Rifle aquifer adjacent to the Colorado River. The subsurface is a massive, yet poorly understood, repository of organic carbon as well as greenhouse gases. Another research question, based on having the microbial populations close to both the water table and the river, is how they impact carbon, nitrogen and sulfur cycles. Her project is part of the first coordinated attempt to quantify the metabolic potential of an entire subsurface ecosystem under the aegis of the Lawrence Berkeley National Laboratory’s Subsurface Biogeochemistry Scientific Focus Area.

Banfield also successfully competed for a second CSP project to characterize the tree-root microbial interactions that occur below the soil mantle in the unsaturated zone or vadose zone, which extends into unweathered bedrock. The project’s goal is to understand how microbial communities this deep underground influence tree-based carbon fixation in forested watersheds by the Eel River in northwestern California.

Several fungal projects were selected for the 2015 CSP portfolio, including one led by Kabir Peay of Stanford University. He and his colleagues will study how fungal communities in animal feces decompose organic matter. His project has a stated end goal of developing a model system that emulates the ecosystem at Point Reyes National Seashore, where Tule elk are the largest native herbivores.

Another selected fungal project comes from Timothy James of University of Michigan, who will explore the so-called “dark matter fungi” – those not represented in culture collections. By sequencing several dozen species of unculturable zoosporic fungi from freshwater, soils and animal feces, he and his colleagues hope to develop a kingdom-wide fungal phylogenetic framework.

Christian Wurzbacher of Germany’s the Leibniz Institute of Freshwater Ecology and Inland Fisheries, IGB, will characterize fungi from the deep sea to peatlands to freshwater streams to understand the potentially novel adaptations that are necessary to thrive in their aquatic environments. The genomic information would provide information on their metabolic capabilities for breaking down cellulose, lignin and other plant cell wall components, and animal polymers such as keratin and chitin.

Many of the selected projects focus on DOE JGI Flagship Plant Genomes, with most centered on the poplar (Populus trichocarpa.) For example, longtime DOE JGI collaborator Steve DiFazio of West Virginia University is interested in poplar but will study its reproductive development with the help of a close relative, the willow (Salix purpurea). With its shorter generation time, the plant is a good model system and comparator for understanding sex determination, which can help bioenergy crop breeders by, for example, either accelerating or preventing flowering.

Another project comes from Posy Busby of the University of Washington, who will study the interactions between the poplar tree and its fungal, non-pathogenic symbionts or endophytes. As disease-causing pathogens interact with endophytes in leaves, he noted in his proposal, understanding the roles and functions of endophytes could prove useful to meeting future fuel and food requirements.

Along the lines of poplar endophytes, Carolin Frank at UC Merced will investigate the nitrogen-fixing endophytes in poplar, willow, and pine, with the aim of improving growth in grasses and agricultural crops under nutrient-poor conditions.

Rotem Sorek from the Weizmann Institute of Science in Israel takes a different approach starting from the hypothesis that poplar trees have an adaptive immunity system rooted in genome-encoded immune memory. Through deep sequencing of tissues from single poplar trees (some over a century old, others younger) his team hopes to gain insights into the tree genome’s short-term evolution and how its gene expression profiles change over time, as well as to predict how trees might respond under various climate change scenarios.

Tackling a different DOE JGI Flagship Plant Genome, Debbie Laudencia-Chingcuangco of the USDA-ARS will develop a genome-wide collection of several thousand mutants of the model grass Brachypodium distachyon to help domesticate the grasses that are being considered as candidate bioenergy feedstocks. This work is being done in collaboration with researchers at the Great Lakes Bioenergy Research Center, as the team there considers Brachypodium “critical to achieving its mission of developing productive energy crops that can be easily processed into fuels.”

Continuing the theme of candidate bioenergy grasses, Kankshita Swaminathan from the University of Illinois will study gene expression in polyploidy grasses Miscanthus and sugarcane, comparing them against the closely related diploid grass sorghum to understand how these plants recycle nutrients.

Baohong Zhang of East Carolina University also focused on a bioenergy grass, and his project will look at the microRNAs in switchgrass. These regulatory molecules are each just a couple dozen nucleotides in length and can downregulate (decrease the quantity of) a cellular component. With a library of these small transcripts, he and his team hope to identify the gene expression variation associated with desirable biofuel traits in switchgrass such as increased biomass and responses to drought and salinity stressors.

Nitin Baliga of the Institute of Systems Biology will use DOE JGI genome sequences to build a working model of the networks that regulate lipid accumulation in Chlamydomonas reinhardtii, still another DOE JGI Plant Flagship Genome and a model for characterizing biofuel production by algae.

Other accepted projects include:

The study of the genomes of 32 fungi of the Agaricales order, including 16 fungi to be sequenced for the first time, will be carried out by Jose Maria Barrasa of Spain’s University of Alcala. While many of the basidiomycete fungi involved in wood degradation that have been sequenced are from the Polyporales, he noted in his proposal, many of the fungi involved in breaking down leaf litter and buried wood are from the order Agaricales.

Now at the University of Connecticut, Jonathan Klassen conducted postdoctoral studies at GLBRC researcher Cameron Currie’s lab at University of Wisconsin-Madison. His project will study interactions in ant-microbial community fungus gardens in three states to learn more about how the associated bacterial metagenomes contribute to carbon and nitrogen cycling.

Hinsby Cadillo-Quiroz, at Arizona State University, will conduct a study of the microbial communities in the Amazon peatlands to understand their roles in both emitting greenhouse gases and in storing and cycling carbon. The peatlands are hotspots of soil organic carbon accumulation, and in the tropical regions, they are estimated to hold between 11 percent and 14 percent, or nearly 90 gigatons, of the global carbon stored in soils.

Barbara Campbell, Clemson University will study carbon cycling mechanisms of active bacteria and associated viruses in the freshwater to marine transition zone of the Delaware Bay. Understanding the microbes’ metabolism would help researchers understand they capabilities with regard to dealing with contaminants, and their roles in the nitrogen, sulfur and carbon cycles.

Jim Fredrickson of Pacific Northwest National Laboratory will characterize functional profiles of microbial mats in California, Washington and Yellowstone National Park to understand various functions such as how they produce hydrogen and methane, and break down cellulose.

Joyce Loper of USDA-ARS will carry out a comparative analysis of all Pseudomonas bacteria getting from DOE JGI the sequences of just over 100 type strains to infer a evolutionary history of the this genus — a phylogeny — to characterize the genomic diversity, and determine the distribution of genes linked to key observable traits in this non-uniform group of bacteria.

Holly Simon of Oregon Health & Science University is studying microbial populations in the Columbia River estuary, in part to learn how they enhance greenhouse gas CO2 methane and nitrous oxide production.

Michael Thon from Spain’s University of Salamanca will explore sequences of strains of the Colletotrichum species complex, which include fungal pathogens that infect many crops. One of the questions he and his team will ask is how these fungal strains have adapted to break down the range of plant cell wall compositions.

Kathleen Treseder of UC Irvine will study genes involved in sensitivity to higher temperatures in fungi from a warming experiment in an Alaskan boreal forest. The team’s plan is to fold the genomic information gained into a trait-based ecosystem model called DEMENT to predict carbon dioxide emissions under global warming.

Mary Wildermuth of UC Berkeley will study nearly a dozen genomes of powdery mildew fungi, including three that infect designated bioenergy crops. The project will identify the mechanisms by which the fungi successfully infect plants, information that could lead to the development of crops with improved resistance to fungal infection and limiting fungicide use to allow more sustainable agricultural practices.

Several researchers who have previously collaborated with the DOE JGI have new projects:

Ludmila Chistoserdova from the University of Washington had a pioneering collaboration with the DOE JGI to study microbial communities in Lake Washington. In her new project, she and her team will look at the microbes in the Lake Washington sediment to understand their role in metabolizing the potent greenhouse gas methane.

Rick Cavicchioli of Australia’s University of New South Wales will track how microbial communities change throughout a complete annual cycle in three millennia-old Antarctic lakes and a near-shore marine site. By establishing what the microbes do in different seasons, he noted in his proposal, he and his colleagues hope to learn which microbial processes change and about the factors that control the evolution and speciation of marine-derived communities in cold environments.

With samples collected from surface waters down to the deep ocean, Steve Hallam from Canada’s University of British Columbia will explore metabolic pathways and compounds involved in marine carbon cycling processes to understand how carbon is regulated in the oceans.

The project of Hans-Peter Klenk, of DSMZ in Germany, will generate sequences of 1,000 strains of Actinobacteria, which represent the third most populated bacterial phylum and look for genes that encode cellulose-degrading enzymes or enzymes involved in synthesizing novel, natural products.

Han Wosten of the Netherlands’ Utrecht University will carry out a functional genomics approach to wood degradation by looking at Agaricomycetes, in particular the model white rot fungus Schizophyllum commune and the more potent wood-degrading white rots Phanaerochaete chrysosporium and Pleurotus ostreatus that the DOE JGI has previously sequenced.

Wen-Tso Liu of the University of Illinois and his colleagues want to understand the microbial ecology in anaerobic digesters, key components of the wastewater treatment process. They will study microbial communities in anaerobic digesters from the United States, East Asia and Europe to understand the composition and function of the microbes as they are harnessed for this low-cost municipal wastewater strategy efficiently removes waster and produces methane as a sustainable energy source.

Another project that involves wastewater, albeit indirectly, comes from Erica Young of the University of Wisconsin. She has been studying algae grown in wastewater to track how they use nitrogen and phosphorus, and how cellulose and lipids are produced. Her CSP project will characterize the relationship between the algae and the bacteria that help stabilize these algal communities, particularly the diversity of the bacterial community and the pathways and interactions involved in nutrient uptake and carbon sequestration.

Previous CSP projects and other DOE JGI collaborations are highlighted in some of the DOE JGI Annual User Meeting talks that can be seen here: http://usermeeting.jgi.doe.gov/past-speakers/. The 10th Annual Genomics of Energy and Environment Meeting will be held March 24-26, 2015 in Walnut Creek, Calif. A preliminary speakers list is posted here (http://usermeeting.jgi.doe.gov/) and registration will be opened in the first week of November.

First eyewitness accounts of mystery volcanic eruption

This eruption occurred just before the 1815 Tambora volcanic eruption which is famous for its impact on climate worldwide, with 1816 given memorable names such as ‘Eighteen-Hundred-and-Froze-to-Death’, the ‘Year of the Beggar’ and the ‘Year Without a Summer’ because of unseasonal frosts, crop failure and famine across Europe and North America. The extraordinary conditions are considered to have inspired literary works such as Byron’s ‘Darkness’ and Mary Shelley’s Frankenstein.

However, the global deterioration of the 1810s into the coldest decade in the last 500 years started six years earlier, with another large eruption. In contrast to Tambora, this so-called ‘Unknown’ eruption seemingly occurred unnoticed, with both its location and date a mystery. In fact the ‘Unknown’ eruption was only recognised in the 1990s, from tell-tale markers in Greenland and Antarctic ice that record the rare events when volcanic aerosols are so violently erupted that they reach the Earth’s stratosphere.

Working in collaboration with colleagues from the School of Earth Sciences and PhD student Alvaro Guevara-Murua, Dr Caroline Williams, from the Department of Hispanic, Portuguese and Latin American Studies, began searching historical archives for references to the event.

Dr Williams said: “I spent months combing through the vast Spanish colonial archive, but it was a fruitless search – clearly the volcano wasn’t in Latin America. I then turned to the writings of Colombian scientist Francisco José de Caldas, who served as Director of the Astronomical Observatory of Bogotá between 1805 and 1810. Finding his precise description of the effects of an eruption was a ‘Eureka’ moment.”

In February 1809 Caldas wrote about a “mystery” that included a constant, stratospheric “transparent cloud that obstructs the sun’s brilliance” over Bogotá, starting on the 11 December 1808 and seen across Colombia. He gave detailed observations, for example that the “natural fiery colour [of the sun] has changed to that of silver, so much so that many have mistaken it for the moon”; and that the weather was unusually cold, the fields covered with ice and the crops damaged by frost.

Unearthing a short account written by physician José Hipólito Unanue in Lima, Peru, describing sunset after-glows (a common atmospheric effect caused by volcanic aerosols in the stratosphere) at the same time as Caldas’ “vapours above the horizon”, enabled the researchers to verify that the atmospheric effects of the eruption were seen at the same time on both sides of the equator.

These two 19th century Latin American scientists provide the first direct observations that can be linked to the ‘Unknown’ eruption. More importantly, the accounts date the eruption to within a fortnight of 4 December 1808.

Dr Erica Hendy said: “There have to be more observations hidden away, for example in ship logs. Having a date for the eruption will now make it much easier to track these down, and maybe even pinpoint the volcano. Climate modelling of this fascinating decade will also now be more accurate because the season of the eruption determines how the aerosols disperse around the globe and where climatic effects are felt.”

Alvaro Guevara-Murua added: “This study has meant delving into many fields of research – obviously paleoclimatology and volcanology, but also 19th century meteorology and Spanish colonial history – and has also needed rigorous precision to correctly translate the words of two scientists writing 200 years ago. Giving them a voice in modern science has been a big responsibility.”

One further question remains: why are there so few historical accounts of what was clearly a significant event with wide-reaching consequences? Perhaps, Dr Williams suggests, the political environment on both sides of the Atlantic at the beginning of the nineteenth century played a part.

“The eruption coincided with the Napoleonic Wars in Europe, the Peninsular War in Spain, and with political developments in Latin America that would soon lead to the independence of almost all of Spain’s American colonies. It’s possible that, in Europe and Latin America at least, the attention of individuals who might otherwise have provided us with a record of unusual meteorological or atmospheric effects simply turned to military and political matters instead,” she said.

First eyewitness accounts of mystery volcanic eruption

This eruption occurred just before the 1815 Tambora volcanic eruption which is famous for its impact on climate worldwide, with 1816 given memorable names such as ‘Eighteen-Hundred-and-Froze-to-Death’, the ‘Year of the Beggar’ and the ‘Year Without a Summer’ because of unseasonal frosts, crop failure and famine across Europe and North America. The extraordinary conditions are considered to have inspired literary works such as Byron’s ‘Darkness’ and Mary Shelley’s Frankenstein.

However, the global deterioration of the 1810s into the coldest decade in the last 500 years started six years earlier, with another large eruption. In contrast to Tambora, this so-called ‘Unknown’ eruption seemingly occurred unnoticed, with both its location and date a mystery. In fact the ‘Unknown’ eruption was only recognised in the 1990s, from tell-tale markers in Greenland and Antarctic ice that record the rare events when volcanic aerosols are so violently erupted that they reach the Earth’s stratosphere.

Working in collaboration with colleagues from the School of Earth Sciences and PhD student Alvaro Guevara-Murua, Dr Caroline Williams, from the Department of Hispanic, Portuguese and Latin American Studies, began searching historical archives for references to the event.

Dr Williams said: “I spent months combing through the vast Spanish colonial archive, but it was a fruitless search – clearly the volcano wasn’t in Latin America. I then turned to the writings of Colombian scientist Francisco José de Caldas, who served as Director of the Astronomical Observatory of Bogotá between 1805 and 1810. Finding his precise description of the effects of an eruption was a ‘Eureka’ moment.”

In February 1809 Caldas wrote about a “mystery” that included a constant, stratospheric “transparent cloud that obstructs the sun’s brilliance” over Bogotá, starting on the 11 December 1808 and seen across Colombia. He gave detailed observations, for example that the “natural fiery colour [of the sun] has changed to that of silver, so much so that many have mistaken it for the moon”; and that the weather was unusually cold, the fields covered with ice and the crops damaged by frost.

Unearthing a short account written by physician José Hipólito Unanue in Lima, Peru, describing sunset after-glows (a common atmospheric effect caused by volcanic aerosols in the stratosphere) at the same time as Caldas’ “vapours above the horizon”, enabled the researchers to verify that the atmospheric effects of the eruption were seen at the same time on both sides of the equator.

These two 19th century Latin American scientists provide the first direct observations that can be linked to the ‘Unknown’ eruption. More importantly, the accounts date the eruption to within a fortnight of 4 December 1808.

Dr Erica Hendy said: “There have to be more observations hidden away, for example in ship logs. Having a date for the eruption will now make it much easier to track these down, and maybe even pinpoint the volcano. Climate modelling of this fascinating decade will also now be more accurate because the season of the eruption determines how the aerosols disperse around the globe and where climatic effects are felt.”

Alvaro Guevara-Murua added: “This study has meant delving into many fields of research – obviously paleoclimatology and volcanology, but also 19th century meteorology and Spanish colonial history – and has also needed rigorous precision to correctly translate the words of two scientists writing 200 years ago. Giving them a voice in modern science has been a big responsibility.”

One further question remains: why are there so few historical accounts of what was clearly a significant event with wide-reaching consequences? Perhaps, Dr Williams suggests, the political environment on both sides of the Atlantic at the beginning of the nineteenth century played a part.

“The eruption coincided with the Napoleonic Wars in Europe, the Peninsular War in Spain, and with political developments in Latin America that would soon lead to the independence of almost all of Spain’s American colonies. It’s possible that, in Europe and Latin America at least, the attention of individuals who might otherwise have provided us with a record of unusual meteorological or atmospheric effects simply turned to military and political matters instead,” she said.