Antarctica: Heat comes from the deep

The Antarctic ice sheet is a giant water reservoir. The ice cap on the southern continent is on average 2,100 meters thick and contains about 70 percent of the world’s fresh water. If this ice mass were to melt completely, it could raise the global sea level by 60 meters. Therefore scientists carefully observe changes in the Antarctic. In the renowned international journal Science, researchers from Germany, the UK, the US and Japan are now publishing data according to which water temperatures, in particular on the shallow shelf seas of West Antarctica, are rising. “There are many large glaciers in the area. The elevated temperatures have accelerated the melting and sliding of these glaciers in recent decades and there are no indications that this trend is changing,” says the lead author of the study, Dr. Sunke Schmidtko from GEOMAR Helmholtz Centre for Ocean Research Kiel.

For their study, he and his colleagues of the University of East Anglia, the California Institute of Technology and the University of Hokkaido (Japan) evaluated all oceanographic data from the waters around Antarctica from 1960 to 2014 that were available in public databases. These data show that five decades ago, the water masses in the West Antarctic shelf seas were already warmer than in other parts of Antarctica, for example, in the Weddell Sea. However, the temperature difference is not constant. Since 1960, the temperatures in the West Antarctic Amundsen Sea and the Bellingshausen Sea have been rising. “Based on the data we were able to see that this shelf process is induced from the open ocean,” says Dr. Schmidtko.

Around Antarctica in greater depth along the continental slope water masses with temperatures from 0.5 to 1.5°C (33-35°F) are predominant. These temperatures are very warm for Antarctic conditions. “These waters have warmed in West Antarctica over the past 50 years. And they are significant shallower than 50 years ago,” says Schmidtko. Especially in the Amundsen Sea and Bellingshausen Sea they now increasingly spill onto the shelf and warm the shelf.

“These are the regions in which accelerated glacial melting has been observed for some time. We show that oceanographic changes over the past 50 years have probably caused this melting. If the water continues to warm, the increased penetration of warmer water masses onto the shelf will likely further accelerate this process, with an impact on the rate of global sea level rise ” explains Professor Karen Heywood from the University of East Anglia.

The scientists also draw attention to the rising up of warm water masses in the southwestern Weddell Sea. Here very cold temperatures (less than minus 1.5°C or 29°F) prevail on the shelf and a large-scale melting of shelf ice has not been observed yet. If the shoaling of warm water masses continues, it is expected that there will be major environmental changes with dramatic consequences for the Filchner or Ronne Ice Shelf, too. For the first time glaciers outside the West Antarctic could experience enhanced melting from below.

To what extent the diverse biology of the Southern Ocean is influenced by the observed changes is not fully understood. The shelf areas include spawning areas for the Antarctic krill, a shrimp species widespread in the Southern Ocean, which plays a key role in the Antarctic food chain. Research results have shown that spawning cycles could change in warmer conditions. A final assessment of the impact has not yet been made.

The exact reasons for the increase of the heating and the rising of warm water masses has not yet been completely resolved. “We suspect that they are related to large-scale variations in wind systems over the southern hemisphere. But which processes specifically play a role must be evaluated in more detail.” says Dr. Schmidtko.

West Antarctic melt rate has tripled: UC Irvine-NASA

A comprehensive, 21-year analysis of the fastest-melting region of Antarctica has found that the melt rate of glaciers there has tripled during the last decade.

The glaciers in the Amundsen Sea Embayment in West Antarctica are hemorrhaging ice faster than any other part of Antarctica and are the most significant Antarctic contributors to sea level rise. This study is the first to evaluate and reconcile observations from four different measurement techniques to produce an authoritative estimate of the amount and the rate of loss over the last two decades.

“The mass loss of these glaciers is increasing at an amazing rate,” said scientist Isabella Velicogna, jointly of the UC Irvine and NASA’s Jet Propulsion Laboratory. Velicogna is a coauthor of a paper on the results, which has been accepted for Dec. 5 publication in the journal Geophysical Research Letters.

Lead author Tyler Sutterley, a UCI doctoral candidate, and his team did the analysis to verify that the melting in this part of Antarctica is shifting into high gear. “Previous studies had suggested that this region is starting to change very dramatically since the 1990s, and we wanted to see how all the different techniques compared,” Sutterley said. “The remarkable agreement among the techniques gave us confidence that we are getting this right.”

The researchers reconciled measurements of the mass balance of glaciers flowing into the Amundsen Sea Embayment. Mass balance is a measure of how much ice the glaciers gain and lose over time from accumulating or melting snow, discharges of ice as icebergs, and other causes. Measurements from all four techniques were available from 2003 to 2009. Combined, the four data sets span the years 1992 to 2013.

The glaciers in the embayment lost mass throughout the entire period. The researchers calculated two separate quantities: the total amount of loss, and the changes in the rate of loss.

The total amount of loss averaged 83 gigatons per year (91.5 billion U.S. tons). By comparison, Mt. Everest weighs about 161 gigatons, meaning the Antarctic glaciers lost a Mt.-Everest’s-worth amount of water weight every two years over the last 21 years.

The rate of loss accelerated an average of 6.1 gigatons (6.7 billion U.S. tons) per year since 1992.

From 2003 to 2009, when all four observational techniques overlapped, the melt rate increased an average of 16.3 gigatons per year — almost three times the rate of increase for the full 21-year period. The total amount of loss was close to the average at 84 gigatons.

The four sets of observations include NASA’s Gravity Recovery and Climate Experiment (GRACE) satellites, laser altimetry from NASA’s Operation IceBridge airborne campaign and earlier ICESat satellite, radar altimetry from the European Space Agency’s Envisat satellite, and mass budget analyses using radars and the University of Utrecht’s Regional Atmospheric Climate Model.

The scientists noted that glacier and ice sheet behavior worldwide is by far the greatest uncertainty in predicting future sea level. “We have an excellent observing network now. It’s critical that we maintain this network to continue monitoring the changes,” Velicogna said, “because the changes are proceeding very fast.”

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Fountain of youth underlies Antarctic Mountains

Images of the ice-covered Gamburtsev Mountains revealed water-filled valleys, as seen by the cluster of vertical lines in this image. -  Tim Creyts
Images of the ice-covered Gamburtsev Mountains revealed water-filled valleys, as seen by the cluster of vertical lines in this image. – Tim Creyts

Time ravages mountains, as it does people. Sharp features soften, and bodies grow shorter and rounder. But under the right conditions, some mountains refuse to age. In a new study, scientists explain why the ice-covered Gamburtsev Mountains in the middle of Antarctica looks as young as they do.

The Gamburtsevs were discovered in the 1950s, but remained unexplored until scientists flew ice-penetrating instruments over the mountains 60 years later. As this ancient hidden landscape came into focus, scientists were stunned to see the saw-toothed and towering crags of much younger mountains. Though the Gamburtsevs are contemporaries of the largely worn-down Appalachians, they looked more like the Rockies, which are nearly 200 million years younger.

More surprising still, the scientists discovered a vast network of lakes and rivers at the mountains’ base. Though water usually speeds erosion, here it seems to have kept erosion at bay. The reason, researchers now say, has to do with the thick ice that has entombed the Gamburtsevs since Antarctica went into a deep freeze 35 million years ago.

“The ice sheet acts like an anti-aging cream,” said the study’s lead author, Timothy Creyts, a geophysicist at Columbia University’s Lamont-Doherty Earth Observatory. “It triggers a series of thermodynamic processes that have almost perfectly preserved the Gamburtsevs since ice began spreading across the continent.”

The study, which appears in the latest issue of the journal Geophysical Research Letters, explains how the blanket of ice covering the Gamburtsevs has preserved its rugged ridgelines.

Snow falling at the surface of the ice sheet draws colder temperatures down, closer to protruding peaks in a process called divergent cooling. At the same time, heat radiating from bedrock beneath the ice sheet melts ice in the deep valleys to form rivers and lakes. As rivers course along the base of the ice sheet, high pressures from the overlying ice sheet push water up valleys in reverse. This uphill flow refreezes as it meets colder temperature from above. Thus, ridgelines are cryogenically preserved.

The oldest rocks in the Gamburtsevs formed more than a billion years ago, in the collision of several continents. Though these prototype mountains eroded away, a lingering crustal root became reactivated when the supercontinent Gondwana ripped apart, starting about 200 million years ago. Tectonic forces pushed the land up again to form the modern Gamburtsevs, which range across an area the size of the Alps. Erosion again chewed away at the mountains until earth entered a cooling phase 35 million years ago. Expanding outward from the Gamburtsevs, a growing layer of ice joined several other nucleation points to cover the entire continent in ice.

The researchers say that the mechanism that stalled aging of the Gamburtsevs at higher elevations may explain why some ridgelines in the Torngat Mountains on Canada’s Labrador Peninsula and the Scandinavian Mountains running through Norway, Sweden and Finland appear strikingly untouched. Massive ice sheets covered both landscapes during the last ice age, which peaked about 20,000 years ago, but many high-altitude features bear little trace of this event.

“The authors identify a mechanism whereby larger parts of mountains ranges in glaciated regions–not just Antarctica–could be spared from erosion,” said Stewart Jamieson, a glaciologist at Durham University who was not involved in the study. “This is important because these uplands are nucleation centers for ice sheets. If they were to gradually erode during glacial cycles, they would become less effective as nucleation points during later ice ages.”

Ice sheet behavior, then, may influence climate change in ways that scientists and computer models have yet to appreciate. As study coauthor Fausto Ferraccioli, head of the British Antarctic Survey’s airborne geophysics group, put it: “If these mountains in interior East Antarctica had been more significantly eroded then the ice sheet itself
may have had a different history.”

Other Authors


Hugh Carr and Tom Jordan of the British Antarctic Survey; Robin Bell, Michael Wolovick and Nicholas Frearson of Lamont-Doherty; Kathryn Rose of University of Bristol; Detlef Damaske of Germany’s Federal Institute for Geosciences and Natural Resources; David Braaten of Kansas University; and Carol Finn of the U.S. Geological Survey.

Copies of the paper, “Freezing of ridges and water networks preserves the Gamburtsev Subglacial Mountains for millions of years,” are available from the authors.

Scientist Contact


Tim Creyts

845-365-8368

tcreyts@ldeo.columbia.edu

New study shows 3 abrupt pulse of CO2 during last deglaciation

A new study shows that the rise of atmospheric carbon dioxide that contributed to the end of the last ice age more than 10,000 years ago did not occur gradually, but was characterized by three “pulses” in which C02 rose abruptly.

Scientists are not sure what caused these abrupt increases, during which C02 levels rose about 10-15 parts per million – or about 5 percent per episode – over a period of 1-2 centuries. It likely was a combination of factors, they say, including ocean circulation, changing wind patterns, and terrestrial processes.

The finding is important, however, because it casts new light on the mechanisms that take the Earth in and out of ice age regimes. Results of the study, which was funded by the National Science Foundation, appear this week in the journal Nature.

“We used to think that naturally occurring changes in carbon dioxide took place relatively slowly over the 10,000 years it took to move out of the last ice age,” said Shaun Marcott, lead author on the article who conducted his study as a post-doctoral researcher at Oregon State University. “This abrupt, centennial-scale variability of CO2 appears to be a fundamental part of the global carbon cycle.”

Some previous research has hinted at the possibility that spikes in atmospheric carbon dioxide may have accelerated the last deglaciation, but that hypothesis had not been resolved, the researchers say. The key to the new finding is the analysis of an ice core from the West Antarctic that provided the scientists with an unprecedented glimpse into the past.

Scientists studying past climate have been hampered by the limitations of previous ice cores. Cores from Greenland, for example, provide unique records of rapid climate events going back 120,000 years – but high concentrations of impurities don’t allow researchers to accurately determine atmospheric carbon dioxide records. Antarctic ice cores have fewer impurities, but generally have had lower “temporal resolution,” providing less detailed information about atmospheric CO2.

However, a new core from West Antarctica, drilled to a depth of 3,405 meters in 2011 and spanning the last 68,000 years, has “extraordinary detail,” said Oregon State paleoclimatologist Edward Brook, a co-author on the Nature study and an internationally recognized ice core expert. Because the area where the core was taken gets high annual snowfall, he said, the new ice core provides one of the most detailed records of atmospheric CO2.

“It is a remarkable ice core and it clearly shows distinct pulses of carbon dioxide increase that can be very reliably dated,” Brook said. “These are some of the fastest natural changes in CO2 we have observed, and were probably big enough on their own to impact the Earth’s climate.

“The abrupt events did not end the ice age by themselves,” Brook added. “That might be jumping the gun a bit. But it is fair to say that the natural carbon cycle can change a lot faster than was previously thought – and we don’t know all of the mechanisms that caused that rapid change.”

The researchers say that the increase in atmospheric CO2 from the peak of the last ice age to complete deglaciation was about 80 parts per million, taking place over 10,000 years. Thus, the finding that 30-45 ppm of the increase happened in just a few centuries was significant.

The overall rise of atmospheric carbon dioxide during the last deglaciation was thought to have been triggered by the release of CO2 from the deep ocean – especially the Southern Ocean. However, the researchers say that no obvious ocean mechanism is known that would trigger rises of 10-15 ppm over a time span as short as one to two centuries.

“The oceans are simply not thought to respond that fast,” Brook said. “Either the cause of these pulses is at least part terrestrial, or there is some mechanism in the ocean system we don’t yet know about.”

One reason the researchers are reluctant to pin the end of the last ice age solely on CO2 increases is that other processes were taking place, according to Marcott, who recently joined the faculty of the University of Wisconsin-Madison.

“At the same time CO2 was increasing, the rate of methane in the atmosphere was also increasing at the same or a slightly higher rate,” Marcott said. “We also know that during at least two of these pulses, the Atlantic Meridional Overturning Circulation changed as well. Changes in the ocean circulation would have affected CO2 – and indirectly methane, by impacting global rainfall patterns.”

“The Earth is a big coupled system,” he added, “and there are many pieces to the puzzle. The discovery of these strong, rapid pulses of CO2 is an important piece.”

Past climate change and continental ice melt linked to varying CO2 levels

Scientists at the Universities of Southampton and Cardiff have discovered that a globally warm period in Earth’s geological past featured highly variable levels of CO2.

Previous studies have found that the Miocene climatic optimum, a period that extends from about 15 to 17 million years ago, was associated with big changes in both temperature and the amount of continental ice on the planet.

Now a new study, published in Paleoceanography, has found that these changes in temperature and ice volume were matched by equally dramatic shifts in atmospheric CO2.

Using more detailed records than has previously been available, scientists have shown that CO2 levels in this period reached around 500 ppm (parts per million), the same level that the Intergovernmental Panel on Climate Change (IPPC) projects for the end of the century.

Lead author Rosanna Greenop, from Ocean and Earth Science at the University of Southampton, says: “The drivers of short term, orbital-scale temperature and ice volume change during warm periods of the Earth’s history have never been analysed before. Here we are able to show that in the same way as the more recent ice ages are linked with cycles of CO2, it also plays an important role in cyclical climate changes during warm periods.

Researchers also showed that at low levels of CO2, ice volume varied strongly, but at higher levels, there was little or no additional change in volume. The authors of the study hypothesis that there must be a portion of the East Antarctic ice sheet that varies in volume at the lower end of the CO2 range. However, the absence of additional ice melt at higher CO2 levels suggests that there is also a portion of the ice sheet that remains stable at the maximum CO2 levels.

Evidence suggests that the northern Hemisphere and West Antarctic ice sheets did not exist during the warm Miocene climatic optimum.

“While we recognise that the Miocene climatic optimum is not a perfect analogue for our own warm future, the geological past does represent an actual reality that the Earth system experienced,” says the University of Southampton’s Dr Gavin Foster, co-author of the study. “As such the findings of this study have large implications for the stability of the continental ice sheets in the future. They indicate that portions of the East Antarctic ice sheet can act in a dynamic fashion, growing and shrinking in response to climate forcing.”

Co-author Caroline Lear, of Cardiff University, adds: “We tend to think of the Antarctic ice sheet as a sluggish ice sheet, but these records show that in past warm climates it has been surprisingly sensitive to natural variations in carbon dioxide levels.

2015 DOE JGI’s science portfolio delves deeper into the Earth’s data mine

The U.S. Department of Energy Joint Genome Institute (DOE JGI), a DOE Office of Science user facility, has announced that 32 new projects have been selected for the 2015 Community Science Program (CSP). From sampling Antarctic lakes to Caribbean waters, and from plant root micro-ecosystems, to the subsurface underneath the water table in forested watersheds, the CSP 2015 projects portfolio highlights diverse environments where DOE mission-relevant science can be extracted.

“These projects catalyze JGI’s strategic shift in emphasis from solving an organism’s genome sequence to enabling an understanding of what this information enables organisms to do,” said Jim Bristow, DOE JGI Science Deputy who oversees the CSP. “To accomplish this, the projects selected combine DNA sequencing with large-scale experimental and computational capabilities, and in some cases include JGI’s new capability to write DNA in addition to reading it. These projects will expand research communities, and help to meet the DOE JGI imperative to translate sequence to function and ultimately into solutions for major energy and environmental problems.”

The CSP 2015 projects were selected by an external review panel from 76 full proposals received that resulted from 85 letters of intent submitted. The total allocation for the CSP 2015 portfolio is expected to exceed 60 trillion bases (terabases or Tb)-or the equivalent of 20,000 human genomes of plant, fungal and microbial genome sequences. The full list of projects may be found at http://jgi.doe.gov/our-projects/csp-plans/fy-2015-csp-plans/. The DOE JGI Community Science Program also accepts proposals for smaller-scale microbial, resequencing and DNA synthesis projects and reviews them twice a year. The CSP advances projects that harness DOE JGI’s capability in massive-scale DNA sequencing, analysis and synthesis in support of the DOE missions in alternative energy, global carbon cycling, and biogeochemistry.

Among the CSP 2015 projects selected is one from Regina Lamendella of Juniata College, who will investigate how microbial communities in Marcellus shale, the country’s largest shale gas field, respond to hydraulic fracturing and natural gas extraction. For example, as fracking uses chemicals, researchers are interested in how the microbial communities can break down environmental contaminants, and how they respond to the release of methane during oil extraction operations.

Some 1,500 miles south from those gas extraction sites, Monica Medina-Munoz of Penn State University will study the effect of thermal stress on the Caribbean coral Orbicella faveolata and the metabolic contribution of its coral host Symbiodinium. The calcium carbonate in coral reefs acts as carbon sinks, but reef health depends on microbial communities. If the photosynthetic symbionts are removed from the coral host, for example, the corals can die and calcification rates decrease. Understanding how to maintain stability in the coral-microbiome community can provide information on the coral’s contribution to the global ocean carbon cycle.

Longtime DOE JGI collaborator Jill Banfield of the University of California (UC), Berkeley is profiling the diversity of microbial communities found in the subsurface from the Rifle aquifer adjacent to the Colorado River. The subsurface is a massive, yet poorly understood, repository of organic carbon as well as greenhouse gases. Another research question, based on having the microbial populations close to both the water table and the river, is how they impact carbon, nitrogen and sulfur cycles. Her project is part of the first coordinated attempt to quantify the metabolic potential of an entire subsurface ecosystem under the aegis of the Lawrence Berkeley National Laboratory’s Subsurface Biogeochemistry Scientific Focus Area.

Banfield also successfully competed for a second CSP project to characterize the tree-root microbial interactions that occur below the soil mantle in the unsaturated zone or vadose zone, which extends into unweathered bedrock. The project’s goal is to understand how microbial communities this deep underground influence tree-based carbon fixation in forested watersheds by the Eel River in northwestern California.

Several fungal projects were selected for the 2015 CSP portfolio, including one led by Kabir Peay of Stanford University. He and his colleagues will study how fungal communities in animal feces decompose organic matter. His project has a stated end goal of developing a model system that emulates the ecosystem at Point Reyes National Seashore, where Tule elk are the largest native herbivores.

Another selected fungal project comes from Timothy James of University of Michigan, who will explore the so-called “dark matter fungi” – those not represented in culture collections. By sequencing several dozen species of unculturable zoosporic fungi from freshwater, soils and animal feces, he and his colleagues hope to develop a kingdom-wide fungal phylogenetic framework.

Christian Wurzbacher of Germany’s the Leibniz Institute of Freshwater Ecology and Inland Fisheries, IGB, will characterize fungi from the deep sea to peatlands to freshwater streams to understand the potentially novel adaptations that are necessary to thrive in their aquatic environments. The genomic information would provide information on their metabolic capabilities for breaking down cellulose, lignin and other plant cell wall components, and animal polymers such as keratin and chitin.

Many of the selected projects focus on DOE JGI Flagship Plant Genomes, with most centered on the poplar (Populus trichocarpa.) For example, longtime DOE JGI collaborator Steve DiFazio of West Virginia University is interested in poplar but will study its reproductive development with the help of a close relative, the willow (Salix purpurea). With its shorter generation time, the plant is a good model system and comparator for understanding sex determination, which can help bioenergy crop breeders by, for example, either accelerating or preventing flowering.

Another project comes from Posy Busby of the University of Washington, who will study the interactions between the poplar tree and its fungal, non-pathogenic symbionts or endophytes. As disease-causing pathogens interact with endophytes in leaves, he noted in his proposal, understanding the roles and functions of endophytes could prove useful to meeting future fuel and food requirements.

Along the lines of poplar endophytes, Carolin Frank at UC Merced will investigate the nitrogen-fixing endophytes in poplar, willow, and pine, with the aim of improving growth in grasses and agricultural crops under nutrient-poor conditions.

Rotem Sorek from the Weizmann Institute of Science in Israel takes a different approach starting from the hypothesis that poplar trees have an adaptive immunity system rooted in genome-encoded immune memory. Through deep sequencing of tissues from single poplar trees (some over a century old, others younger) his team hopes to gain insights into the tree genome’s short-term evolution and how its gene expression profiles change over time, as well as to predict how trees might respond under various climate change scenarios.

Tackling a different DOE JGI Flagship Plant Genome, Debbie Laudencia-Chingcuangco of the USDA-ARS will develop a genome-wide collection of several thousand mutants of the model grass Brachypodium distachyon to help domesticate the grasses that are being considered as candidate bioenergy feedstocks. This work is being done in collaboration with researchers at the Great Lakes Bioenergy Research Center, as the team there considers Brachypodium “critical to achieving its mission of developing productive energy crops that can be easily processed into fuels.”

Continuing the theme of candidate bioenergy grasses, Kankshita Swaminathan from the University of Illinois will study gene expression in polyploidy grasses Miscanthus and sugarcane, comparing them against the closely related diploid grass sorghum to understand how these plants recycle nutrients.

Baohong Zhang of East Carolina University also focused on a bioenergy grass, and his project will look at the microRNAs in switchgrass. These regulatory molecules are each just a couple dozen nucleotides in length and can downregulate (decrease the quantity of) a cellular component. With a library of these small transcripts, he and his team hope to identify the gene expression variation associated with desirable biofuel traits in switchgrass such as increased biomass and responses to drought and salinity stressors.

Nitin Baliga of the Institute of Systems Biology will use DOE JGI genome sequences to build a working model of the networks that regulate lipid accumulation in Chlamydomonas reinhardtii, still another DOE JGI Plant Flagship Genome and a model for characterizing biofuel production by algae.

Other accepted projects include:

The study of the genomes of 32 fungi of the Agaricales order, including 16 fungi to be sequenced for the first time, will be carried out by Jose Maria Barrasa of Spain’s University of Alcala. While many of the basidiomycete fungi involved in wood degradation that have been sequenced are from the Polyporales, he noted in his proposal, many of the fungi involved in breaking down leaf litter and buried wood are from the order Agaricales.

Now at the University of Connecticut, Jonathan Klassen conducted postdoctoral studies at GLBRC researcher Cameron Currie’s lab at University of Wisconsin-Madison. His project will study interactions in ant-microbial community fungus gardens in three states to learn more about how the associated bacterial metagenomes contribute to carbon and nitrogen cycling.

Hinsby Cadillo-Quiroz, at Arizona State University, will conduct a study of the microbial communities in the Amazon peatlands to understand their roles in both emitting greenhouse gases and in storing and cycling carbon. The peatlands are hotspots of soil organic carbon accumulation, and in the tropical regions, they are estimated to hold between 11 percent and 14 percent, or nearly 90 gigatons, of the global carbon stored in soils.

Barbara Campbell, Clemson University will study carbon cycling mechanisms of active bacteria and associated viruses in the freshwater to marine transition zone of the Delaware Bay. Understanding the microbes’ metabolism would help researchers understand they capabilities with regard to dealing with contaminants, and their roles in the nitrogen, sulfur and carbon cycles.

Jim Fredrickson of Pacific Northwest National Laboratory will characterize functional profiles of microbial mats in California, Washington and Yellowstone National Park to understand various functions such as how they produce hydrogen and methane, and break down cellulose.

Joyce Loper of USDA-ARS will carry out a comparative analysis of all Pseudomonas bacteria getting from DOE JGI the sequences of just over 100 type strains to infer a evolutionary history of the this genus — a phylogeny — to characterize the genomic diversity, and determine the distribution of genes linked to key observable traits in this non-uniform group of bacteria.

Holly Simon of Oregon Health & Science University is studying microbial populations in the Columbia River estuary, in part to learn how they enhance greenhouse gas CO2 methane and nitrous oxide production.

Michael Thon from Spain’s University of Salamanca will explore sequences of strains of the Colletotrichum species complex, which include fungal pathogens that infect many crops. One of the questions he and his team will ask is how these fungal strains have adapted to break down the range of plant cell wall compositions.

Kathleen Treseder of UC Irvine will study genes involved in sensitivity to higher temperatures in fungi from a warming experiment in an Alaskan boreal forest. The team’s plan is to fold the genomic information gained into a trait-based ecosystem model called DEMENT to predict carbon dioxide emissions under global warming.

Mary Wildermuth of UC Berkeley will study nearly a dozen genomes of powdery mildew fungi, including three that infect designated bioenergy crops. The project will identify the mechanisms by which the fungi successfully infect plants, information that could lead to the development of crops with improved resistance to fungal infection and limiting fungicide use to allow more sustainable agricultural practices.

Several researchers who have previously collaborated with the DOE JGI have new projects:

Ludmila Chistoserdova from the University of Washington had a pioneering collaboration with the DOE JGI to study microbial communities in Lake Washington. In her new project, she and her team will look at the microbes in the Lake Washington sediment to understand their role in metabolizing the potent greenhouse gas methane.

Rick Cavicchioli of Australia’s University of New South Wales will track how microbial communities change throughout a complete annual cycle in three millennia-old Antarctic lakes and a near-shore marine site. By establishing what the microbes do in different seasons, he noted in his proposal, he and his colleagues hope to learn which microbial processes change and about the factors that control the evolution and speciation of marine-derived communities in cold environments.

With samples collected from surface waters down to the deep ocean, Steve Hallam from Canada’s University of British Columbia will explore metabolic pathways and compounds involved in marine carbon cycling processes to understand how carbon is regulated in the oceans.

The project of Hans-Peter Klenk, of DSMZ in Germany, will generate sequences of 1,000 strains of Actinobacteria, which represent the third most populated bacterial phylum and look for genes that encode cellulose-degrading enzymes or enzymes involved in synthesizing novel, natural products.

Han Wosten of the Netherlands’ Utrecht University will carry out a functional genomics approach to wood degradation by looking at Agaricomycetes, in particular the model white rot fungus Schizophyllum commune and the more potent wood-degrading white rots Phanaerochaete chrysosporium and Pleurotus ostreatus that the DOE JGI has previously sequenced.

Wen-Tso Liu of the University of Illinois and his colleagues want to understand the microbial ecology in anaerobic digesters, key components of the wastewater treatment process. They will study microbial communities in anaerobic digesters from the United States, East Asia and Europe to understand the composition and function of the microbes as they are harnessed for this low-cost municipal wastewater strategy efficiently removes waster and produces methane as a sustainable energy source.

Another project that involves wastewater, albeit indirectly, comes from Erica Young of the University of Wisconsin. She has been studying algae grown in wastewater to track how they use nitrogen and phosphorus, and how cellulose and lipids are produced. Her CSP project will characterize the relationship between the algae and the bacteria that help stabilize these algal communities, particularly the diversity of the bacterial community and the pathways and interactions involved in nutrient uptake and carbon sequestration.

Previous CSP projects and other DOE JGI collaborations are highlighted in some of the DOE JGI Annual User Meeting talks that can be seen here: http://usermeeting.jgi.doe.gov/past-speakers/. The 10th Annual Genomics of Energy and Environment Meeting will be held March 24-26, 2015 in Walnut Creek, Calif. A preliminary speakers list is posted here (http://usermeeting.jgi.doe.gov/) and registration will be opened in the first week of November.

First eyewitness accounts of mystery volcanic eruption

This eruption occurred just before the 1815 Tambora volcanic eruption which is famous for its impact on climate worldwide, with 1816 given memorable names such as ‘Eighteen-Hundred-and-Froze-to-Death’, the ‘Year of the Beggar’ and the ‘Year Without a Summer’ because of unseasonal frosts, crop failure and famine across Europe and North America. The extraordinary conditions are considered to have inspired literary works such as Byron’s ‘Darkness’ and Mary Shelley’s Frankenstein.

However, the global deterioration of the 1810s into the coldest decade in the last 500 years started six years earlier, with another large eruption. In contrast to Tambora, this so-called ‘Unknown’ eruption seemingly occurred unnoticed, with both its location and date a mystery. In fact the ‘Unknown’ eruption was only recognised in the 1990s, from tell-tale markers in Greenland and Antarctic ice that record the rare events when volcanic aerosols are so violently erupted that they reach the Earth’s stratosphere.

Working in collaboration with colleagues from the School of Earth Sciences and PhD student Alvaro Guevara-Murua, Dr Caroline Williams, from the Department of Hispanic, Portuguese and Latin American Studies, began searching historical archives for references to the event.

Dr Williams said: “I spent months combing through the vast Spanish colonial archive, but it was a fruitless search – clearly the volcano wasn’t in Latin America. I then turned to the writings of Colombian scientist Francisco José de Caldas, who served as Director of the Astronomical Observatory of Bogotá between 1805 and 1810. Finding his precise description of the effects of an eruption was a ‘Eureka’ moment.”

In February 1809 Caldas wrote about a “mystery” that included a constant, stratospheric “transparent cloud that obstructs the sun’s brilliance” over Bogotá, starting on the 11 December 1808 and seen across Colombia. He gave detailed observations, for example that the “natural fiery colour [of the sun] has changed to that of silver, so much so that many have mistaken it for the moon”; and that the weather was unusually cold, the fields covered with ice and the crops damaged by frost.

Unearthing a short account written by physician José Hipólito Unanue in Lima, Peru, describing sunset after-glows (a common atmospheric effect caused by volcanic aerosols in the stratosphere) at the same time as Caldas’ “vapours above the horizon”, enabled the researchers to verify that the atmospheric effects of the eruption were seen at the same time on both sides of the equator.

These two 19th century Latin American scientists provide the first direct observations that can be linked to the ‘Unknown’ eruption. More importantly, the accounts date the eruption to within a fortnight of 4 December 1808.

Dr Erica Hendy said: “There have to be more observations hidden away, for example in ship logs. Having a date for the eruption will now make it much easier to track these down, and maybe even pinpoint the volcano. Climate modelling of this fascinating decade will also now be more accurate because the season of the eruption determines how the aerosols disperse around the globe and where climatic effects are felt.”

Alvaro Guevara-Murua added: “This study has meant delving into many fields of research – obviously paleoclimatology and volcanology, but also 19th century meteorology and Spanish colonial history – and has also needed rigorous precision to correctly translate the words of two scientists writing 200 years ago. Giving them a voice in modern science has been a big responsibility.”

One further question remains: why are there so few historical accounts of what was clearly a significant event with wide-reaching consequences? Perhaps, Dr Williams suggests, the political environment on both sides of the Atlantic at the beginning of the nineteenth century played a part.

“The eruption coincided with the Napoleonic Wars in Europe, the Peninsular War in Spain, and with political developments in Latin America that would soon lead to the independence of almost all of Spain’s American colonies. It’s possible that, in Europe and Latin America at least, the attention of individuals who might otherwise have provided us with a record of unusual meteorological or atmospheric effects simply turned to military and political matters instead,” she said.

Antarctic ice sheet is result of CO2 decrease, not continental breakup

Climate modelers from the University of New Hampshire have shown that the most likely explanation for the initiation of Antarctic glaciation during a major climate shift 34 million years ago was decreased carbon dioxide (CO2) levels. The finding counters a 40-year-old theory suggesting massive rearrangements of Earth’s continents caused global cooling and the abrupt formation of the Antarctic ice sheet. It will provide scientists insight into the climate change implications of current rising global CO2 levels.

In a paper published today in Nature, Matthew Huber of the UNH Institute for the Study of Earth, Oceans, and Space and department of Earth sciences provides evidence that the long-held, prevailing theory known as “Southern Ocean gateway opening” is not the best explanation for the climate shift that occurred during the Eocene-Oligocene transition when Earth’s polar regions were ice-free.

“The Eocene-Oligocene transition was a major event in the history of the planet and our results really flip the whole story on its head,” says Huber. “The textbook version has been that gateway opening, in which Australia pulled away from Antarctica, isolated the polar continent from warm tropical currents, and changed temperature gradients and circulation patterns in the ocean around Antarctica, which in turn began to generate the ice sheet. We’ve shown that, instead, CO2-driven cooling initiated the ice sheet and that this altered ocean circulation.”

Huber adds that the gateway theory has been supported by a specific, unique piece of evidence-a “fingerprint” gleaned from oxygen isotope records derived from deep-sea sediments. These sedimentary records have been used to map out gradient changes associated with ocean circulation shifts that were thought to bear the imprint of changes in ocean gateways.

Although declining atmospheric levels of CO2 has been the other main hypothesis used to explain the Eocene-Oligocene transition, previous modeling efforts were unsuccessful at bearing this out because the CO2 drawdown does not by itself match the isotopic fingerprint. It occurred to Huber’s team that the fingerprint might not be so unique and that it might also have been caused indirectly from CO2 drawdown through feedbacks between the growing Antarctic ice sheet and the ocean.

Says Huber, “One of the things we were always missing with our CO2 studies, and it had been missing in everybody’s work, is if conditions are such to make an ice sheet form, perhaps the ice sheet itself is affecting ocean currents and the climate system-that once you start getting an ice sheet to form, maybe it becomes a really active part of the climate system and not just a passive player.”

For their study, Huber and colleagues used brute force to generate results: they simply modeled the Eocene-Oligocene world as if it contained an Antarctic ice sheet of near-modern size and shape and explored the results within the same kind of coupled ocean-atmosphere model used to project future climate change and across a range of CO2 values that are likely to occur in the next 100 years (560 to 1200 parts per million).

“It should be clear that resolving these two very different conceptual models for what caused this huge transformation of the Earth’s surface is really important because today as a global society we are, as I refer to it, dialing up the big red knob of carbon dioxide but we’re not moving continents around.”

Just what caused the sharp drawdown of CO2 is unknown, but Huber points out that having now resolved whether gateway opening or CO2 decline initiated glaciation, more pointed scientific inquiry can be focused on answering that question.

Huber notes that despite his team’s finding, the gateway opening theory won’t now be shelved, for that massive continental reorganization may have contributed to the CO2 drawdown by changing ocean circulation patterns that created huge upwellings of nutrient-rich waters containing plankton that, upon dying and sinking, took vast loads of carbon with them to the bottom of the sea.

Rewriting the history of volcanic forcing during the past 2,000 years

Locations of Antarctic ice core sites used for volcanic sulfate aerosol deposition reconstruction (right); a  DRI scientist examines a freshly drilled ice core in the field before ice cores are analyzed in DRI's ultra-trace ice core analytical laboratory. -  M. Sigl
Locations of Antarctic ice core sites used for volcanic sulfate aerosol deposition reconstruction (right); a DRI scientist examines a freshly drilled ice core in the field before ice cores are analyzed in DRI’s ultra-trace ice core analytical laboratory. – M. Sigl

A team of scientists led by Michael Sigl and Joe McConnell of Nevada’s Desert Research Institute (DRI) has completed the most accurate and precise reconstruction to date of historic volcanic sulfate emissions in the Southern Hemisphere.

The new record, described in a manuscript published today in the online edition of Nature Climate Change, is derived from a large number of individual ice cores collected at various locations across Antarctica and is the first annually resolved record extending through the Common Era (the last 2,000 years of human history).

“This record provides the basis for a dramatic improvement in existing reconstructions of volcanic emissions during recent centuries and millennia,” said the report’s lead author Michael Sigl, a postdoctoral fellow and specialist in DRI’s unique ultra-trace ice core analytical laboratory, located on the Institute’s campus in Reno, Nevada.

These reconstructions are critical to accurate model simulations used to assess past natural and anthropogenic climate forcing. Such model simulations underpin environmental policy decisions including those aimed at regulating greenhouse gas and aerosol emissions to mitigate projected global warming.

Powerful volcanic eruptions are one of the most significant causes of climate variability in the past because of the large amounts of sulfur dioxide they emit, leading to formation of microscopic particles known as volcanic sulfate aerosols. These aerosols reflect more of the sun’s radiation back to space, cooling the Earth. Past volcanic events are measured through sulfate deposition records found in ice cores and have been linked to short-term global and regional cooling.

This effort brought together the most extensive array of ice core sulfate data in the world, including the West Antarctic Ice Sheet (WAIS) Divide ice core – arguably the most detailed record of volcanic sulfate in the Southern Hemisphere. In total, the study incorporated 26 precisely synchronized ice core records collected in an array of 19 sites from across Antarctica.

“This work is the culmination of more than a decade of collaborative ice core collection and analysis in our lab here at DRI,” said Joe McConnell, a DRI research professor who developed the continuous-flow analysis system used to analyze the ice cores.

McConnell, a member of several research teams that collected the cores (including the 2007-2009 Norwegian-American Scientific Traverse of East Antarctica and the WAIS Divide project that reached a depth of 3,405 meters in 2011), added, “The new record identifies 116 individual volcanic events during the last 2000 years.”

“Our new record completes the period from years 1 to 500 AD, for which there were no reconstructions previously, and significantly improves the record for years 500 to 1500 AD,” Sigl added. This new record also builds on DRI’s previous work as part of the international Past Global Changes (PAGES) effort to help reconstruct an accurate 2,000-year-long global temperature for individual continents.

This study involved collaborating researchers from the United States, Japan, Germany, Norway, Australia, and Italy. International collaborators contributed ice core samples for analysis at DRI as well as ice core measurements and climate modeling.

According to Yuko Motizuki from RIKEN (Japan’s largest comprehensive research institution), “The collaboration between DRI, National Institute of Polar Research (NIPR), and RIKEN just started in the last year, and we were very happy to be able to use the two newly obtained ice core records taken from Dome Fuji, where the volcanic signals are clearly visible. This is because precipitation on the site mainly contains stratospheric components.” Dr. Motizuki analyzed the samples collected by the Japanese Antarctic Research Expedition.

Simulations of volcanic sulfate transport performed with a coupled aerosol-climate model were compared to the ice core observations and used to investigate spatial patterns of sulfate deposition to Antarctica.

“Both observations and model results show that not all eruptions lead to the same spatial pattern of sulfate deposition,” said Matthew Toohey from the German institute GEOMAR Helmholtz Centre for Ocean Research Kiel. He added, “Spatial variability in sulfate deposition means that the accuracy of volcanic sulfate reconstructions depends strongly on having a sufficient number of ice core records from as many different regions of Antarctica as possible.”

With such an accurately synchronized and robust array, Sigl and his colleagues were able to revise reconstructions of past volcanic aerosol loading that are widely used today in climate model simulations. Most notably, the research found that the two largest volcanic eruptions in recent Earth history (Samalas in 1257 and Kuwae in 1458) deposited 30 to 35 percent less sulfate in Antarctica, suggesting that these events had a weaker cooling effect on global climate than previously thought.

Study links Greenland ice sheet collapse, sea level rise 400,000 years ago

A research team is hiking to sample the Greenland ice-sheet margin in south Greenland. -  (Photo by Kelsey Winsor, courtesy Oregon State University)
A research team is hiking to sample the Greenland ice-sheet margin in south Greenland. – (Photo by Kelsey Winsor, courtesy Oregon State University)

A new study suggests that a warming period more than 400,000 years ago pushed the Greenland ice sheet past its stability threshold, resulting in a nearly complete deglaciation of southern Greenland and raising global sea levels some 4-6 meters.

The study is one of the first to zero in on how the vast Greenland ice sheet responded to warmer temperatures during that period, which were caused by changes in the Earth’s orbit around the sun.

Results of the study, which was funded by the National Science Foundation, are being published this week in the journal Nature.

“The climate 400,000 years ago was not that much different than what we see today, or at least what is predicted for the end of the century,” said Anders Carlson, an associate professor at Oregon State University and co-author on the study. “The forcing was different, but what is important is that the region crossed the threshold allowing the southern portion of the ice sheet to all but disappear.

“This may give us a better sense of what may happen in the future as temperatures continue rising,” Carlson added.

Few reliable models and little proxy data exist to document the extent of the Greenland ice sheet loss during a period known as the Marine Isotope Stage 11. This was an exceptionally long warm period between ice ages that resulted in a global sea level rise of about 6-13 meters above present. However, scientists have been unsure of how much sea level rise could be attributed to Greenland, and how much may have resulted from the melting of Antarctic ice sheets or other causes.

To find the answer, the researchers examined sediment cores collected off the coast of Greenland from what is called the Eirik Drift. During several years of research, they sampled the chemistry of the glacial stream sediment on the island and discovered that different parts of Greenland have unique chemical features. During the presence of ice sheets, the sediments are scraped off and carried into the water where they are deposited in the Eirik Drift.

“Each terrain has a distinct fingerprint,” Carlson noted. “They also have different tectonic histories and so changes between the terrains allow us to predict how old the sediments are, as well as where they came from. The sediments are only deposited when there is significant ice to erode the terrain. The absence of terrestrial deposits in the sediment suggests the absence of ice.

“Not only can we estimate how much ice there was,” he added, “but the isotopic signature can tell us where ice was present, or from where it was missing.”

This first “ice sheet tracer” utilizes strontium, lead and neodymium isotopes to track the terrestrial chemistry.

The researchers’ analysis of the scope of the ice loss suggests that deglaciation in southern Greenland 400,000 years ago would have accounted for at least four meters – and possibly up to six meters – of global sea level rise. Other studies have shown, however, that sea levels during that period were at least six meters above present, and may have been as much as 13 meters higher.

Carlson said the ice sheet loss likely went beyond the southern edges of Greenland, though not all the way to the center, which has not been ice-free for at least one million years.

In their Nature article, the researchers contrasted the events of Marine Isotope Stage 11 with another warming period that occurred about 125,000 years ago and resulted in a sea level rise of 5-10 meters. Their analysis of the sediment record suggests that not as much of the Greenland ice sheet was lost – in fact, only enough to contribute to a sea level rise of less than 2.5 meters.

“However, other studies have shown that Antarctica may have been unstable at the time and melting there may have made up the difference,” Carlson pointed out.

The researchers say the discovery of an ice sheet tracer that can be documented through sediment core analysis is a major step to understanding the history of ice sheets in Greenland – and their impact on global climate and sea level changes. They acknowledge the need for more widespread coring data and temperature reconstructions.

“This is the first step toward more complete knowledge of the ice history,” Carlson said, “but it is an important one.”